/EXTERNAL KNIH/methylation/K006249_1_lane_gembs

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SAMPLE K006249_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25646406 9546183 37.22 %
NonRefCpG 684101 66116 9.66 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006249_1_lane_gembs_coverage_refCpG.png ./IMG//K006249_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006249_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006249_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006249_1_lane_gembs_quality_refcpg.png ./IMG//K006249_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006249_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 11263317 24.23 % 4645991 18.20 % 544208 46.50 % 86693 28.42 %
Intermediate (0.3-0.7) 15053048 32.38 % 6782545 26.57 % 360423 30.79 % 95731 31.39 %
Methylated (0.7-1) 20177507 43.40 % 14097873 55.23 % 265786 22.71 % 122573 40.19 %
Median Methylation 0.630 0.740 0.340 0.580