/EXTERNAL KNIH/K006250_1_lane_gembs/KEP20160005.Bisulfite-Seq.DNA_Methylation.EGAX00001573565.SMC05_WGBS

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SAMPLE K006250_1_lane_gembs LANE KEP20160005.Bisulfite-Seq.DNA_Methylation.EGAX00001573565.SMC05_WGBS

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1255274524 100.00 % 627637262 100.00 % 627637262 100.00 %
General Reads 1216051263 96.88 % 616151525 98.17 % 599899738 95.58 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1346509 0.11 % 684227 0.11 % 662282 0.11 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 37876752 3.02 % 10801510 1.72 % 27075242 4.31 %
Bisulfite_reads C2T 613818837 48.90 % 310856034 49.53 % 302962803 48.27 %
Bisulfite_reads G2A 603578935 48.08 % 305979718 48.75 % 297599217 47.42 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 306210482
Average Unique 48.79 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 66114507224 34.65 % 26219084721 27.48 % 39895422503 41.82 %
Base Counts Overall C 28259020480 14.81 % 4708960315 4.94 % 23550060165 24.69 %
Base Counts Overall G 30944197839 16.22 % 24282634529 25.45 % 6661563310 6.98 %
Base Counts Overall T 64207569024 33.65 % 39554531100 41.46 % 24653037924 25.84 %
Base Counts Overall N 1276433081 0.67 % 635653159 0.67 % 640779922 0.67 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9616800923614547
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 354530582



Mapping Quality

Mapping Quality Histogram
KEP20160005.Bisulfite-Seq.DNA_Methylation.EGAX00001573565.SMC05_WGBS.mapq.png



Read Length

Read Length Reads
151 627637262
151 627637262



Insert Size Plot

Insert Size Histogram
KEP20160005.Bisulfite-Seq.DNA_Methylation.EGAX00001573565.SMC05_WGBS.isize.png