/EXTERNAL KNIH/mapping_coverage/K006250_1_lane_gembs
BACK
SAMPLE K006250_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1069873712 |
100% |
149615999947 |
100% |
| Mapped |
1045607351 |
97.73 % |
145951779436 |
97.55 % |
| Passed |
308786149 |
28.86 % |
34691777934 |
23.19 % |
| NotPassed |
736821202 |
68.87 % |
111260001502 |
74.36 % |
| |
|
|
|
|
| LowMAPQ |
542489154 |
50.71 % |
81915862254 |
54.75 % |
| MateUnmapped |
24266361 |
2.27 % |
3664220511 |
2.45 % |
| Duplicate |
158034396 |
14.77 % |
23863193796 |
15.95 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
330500 |
0.03 % |
49905500 |
0.03 % |
| |
|
|
|
|
| NotCorrectlyAligned |
35967152 |
3.36 % |
5431039952 |
3.63 % |
| Unmapped |
24266361 |
2.27 % |
3664220511 |
2.45 % |
Base Level Counts
| Bases |
# |
% |
| Total |
46322456787 |
100% |
| Passed |
31967300214 |
69.01 % |
| Trimmed |
1202259323 |
2.60 % |
| Clipped |
1036252970 |
2.24 % |
| Overlapping |
10594425883 |
22.87 % |
| LowQuality |
1522218397 |
3.29 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |