/EXTERNAL KNIH/methylation/K006250_1_lane_gembs

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SAMPLE K006250_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25531689 10977902 43.00 %
NonRefCpG 467705 73511 15.72 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006250_1_lane_gembs_coverage_refCpG.png ./IMG//K006250_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006250_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006250_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006250_1_lane_gembs_quality_refcpg.png ./IMG//K006250_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006250_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 11368196 24.99 % 5601518 20.49 % 274553 36.01 % 54363 21.83 %
Intermediate (0.3-0.7) 14193680 31.20 % 6987977 25.56 % 247822 32.50 % 73842 29.65 %
Methylated (0.7-1) 19936425 43.82 % 14752313 53.96 % 240101 31.49 % 120815 48.52 %
Median Methylation 0.630 0.730 0.470 0.680