/EXTERNAL KNIH/mapping_coverage/K006251_1_lane_gembs
BACK
SAMPLE K006251_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
968943209 |
100% |
133967167656 |
100% |
| Mapped |
927783585 |
95.75 % |
127752064432 |
95.36 % |
| Passed |
252395910 |
26.05 % |
25768525507 |
19.23 % |
| NotPassed |
675387675 |
69.70 % |
101983538925 |
76.13 % |
| |
|
|
|
|
| LowMAPQ |
561351100 |
57.93 % |
84764016100 |
63.27 % |
| MateUnmapped |
41159624 |
4.25 % |
6215103224 |
4.64 % |
| Duplicate |
64520879 |
6.66 % |
9742652729 |
7.27 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
307110 |
0.03 % |
46373610 |
0.03 % |
| |
|
|
|
|
| NotCorrectlyAligned |
49208586 |
5.08 % |
7430496486 |
5.55 % |
| Unmapped |
41159624 |
4.25 % |
6215103224 |
4.64 % |
Base Level Counts
| Bases |
# |
% |
| Total |
37881495632 |
100% |
| Passed |
23355263496 |
61.65 % |
| Trimmed |
928214306 |
2.45 % |
| Clipped |
1338621623 |
3.53 % |
| Overlapping |
10774348502 |
28.44 % |
| LowQuality |
1485047705 |
3.92 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |