/EXTERNAL KNIH/methylation/K006251_1_lane_gembs

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SAMPLE K006251_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25507837 7455535 29.23 %
NonRefCpG 815156 51951 6.37 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006251_1_lane_gembs_coverage_refCpG.png ./IMG//K006251_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006251_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006251_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006251_1_lane_gembs_quality_refcpg.png ./IMG//K006251_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006251_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 9002567 19.83 % 2726151 13.46 % 594628 43.96 % 60937 25.02 %
Intermediate (0.3-0.7) 14299862 31.50 % 4901859 24.20 % 424974 31.42 % 72310 29.69 %
Methylated (0.7-1) 22089391 48.66 % 12628799 62.34 % 333133 24.63 % 110292 45.29 %
Median Methylation 0.680 0.790 0.370 0.640