/EXTERNAL KNIH/K006252_1_lane_gembs

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SAMPLE K006252_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1258632978 100.00 % 629316489 100.00 % 629316489 100.00 %
General Reads 1220709450 96.99 % 618614012 98.30 % 602095438 95.67 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1379518 0.11 % 701347 0.11 % 678171 0.11 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 36544010 2.90 % 10001130 1.59 % 26542880 4.22 %
Bisulfite_reads C2T 614568318 48.83 % 311263727 49.46 % 303304591 48.20 %
Bisulfite_reads G2A 607520650 48.27 % 308051632 48.95 % 299469018 47.59 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 307282221
Average Unique 48.83 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 66261765809 34.64 % 26401602472 27.60 % 39860163337 41.67 %
Base Counts Overall C 28615919361 14.96 % 5046644786 5.28 % 23569274575 24.64 %
Base Counts Overall G 31050755132 16.23 % 24169826209 25.27 % 6880928923 7.19 %
Base Counts Overall T 64102787175 33.51 % 39398887085 41.19 % 24703900090 25.83 %
Base Counts Overall N 1280985179 0.67 % 639145776 0.67 % 641839403 0.67 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9613671235829268
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 356870681



Mapping Quality

Mapping Quality Histogram
K006252_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006252_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
KEP20160007.Bisulfite-Seq.DNA_Methylation.EGAX00001573567.SMC07_WGBS