/EXTERNAL KNIH/mapping_coverage/K006252_1_lane_gembs
BACK
SAMPLE K006252_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1072191420 |
100% |
150218177569 |
100% |
| Mapped |
1047777308 |
97.72 % |
146531646657 |
97.55 % |
| Passed |
305571298 |
28.50 % |
34458539147 |
22.94 % |
| NotPassed |
742206010 |
69.22 % |
112073107510 |
74.61 % |
| |
|
|
|
|
| LowMAPQ |
543669700 |
50.71 % |
82094124700 |
54.65 % |
| MateUnmapped |
24414112 |
2.28 % |
3686530912 |
2.45 % |
| Duplicate |
161043308 |
15.02 % |
24317539508 |
16.19 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
314854 |
0.03 % |
47542954 |
0.03 % |
| |
|
|
|
|
| NotCorrectlyAligned |
37178148 |
3.47 % |
5613900348 |
3.74 % |
| Unmapped |
24414112 |
2.28 % |
3686530912 |
2.45 % |
Base Level Counts
| Bases |
# |
% |
| Total |
45831363715 |
100% |
| Passed |
31751754106 |
69.28 % |
| Trimmed |
1188104018 |
2.59 % |
| Clipped |
1063286696 |
2.32 % |
| Overlapping |
10309537872 |
22.49 % |
| LowQuality |
1518681023 |
3.31 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |