/EXTERNAL KNIH/methylation/K006252_1_lane_gembs

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SAMPLE K006252_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25536745 11878146 46.51 %
NonRefCpG 476003 83391 17.52 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006252_1_lane_gembs_coverage_refCpG.png ./IMG//K006252_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006252_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006252_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006252_1_lane_gembs_quality_refcpg.png ./IMG//K006252_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006252_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 9346221 20.57 % 4933339 17.40 % 247421 32.14 % 46723 17.93 %
Intermediate (0.3-0.7) 13432025 29.56 % 6735137 23.75 % 244416 31.75 % 71979 27.62 %
Methylated (0.7-1) 22654132 49.86 % 16692109 58.86 % 277895 36.10 % 141937 54.46 %
Median Methylation 0.690 0.770 0.530 0.740