/EXTERNAL KNIH/mapping_coverage/K006254_1_lane_gembs
BACK
SAMPLE K006254_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1246505880 |
100% |
168006194851 |
100% |
| Mapped |
1219771644 |
97.86 % |
163969325215 |
97.60 % |
| Passed |
522198082 |
41.89 % |
58635717353 |
34.90 % |
| NotPassed |
697573562 |
55.96 % |
105333607862 |
62.70 % |
| |
|
|
|
|
| LowMAPQ |
539809918 |
43.31 % |
81511297618 |
48.52 % |
| MateUnmapped |
26734236 |
2.14 % |
4036869636 |
2.40 % |
| Duplicate |
116164521 |
9.32 % |
17540842671 |
10.44 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
171154 |
0.01 % |
25844254 |
0.02 % |
| |
|
|
|
|
| NotCorrectlyAligned |
41427969 |
3.32 % |
6255623319 |
3.72 % |
| Unmapped |
26734236 |
2.14 % |
4036869636 |
2.40 % |
Base Level Counts
| Bases |
# |
% |
| Total |
78671762701 |
100% |
| Passed |
52697453981 |
66.98 % |
| Trimmed |
2028898388 |
2.58 % |
| Clipped |
1297360066 |
1.65 % |
| Overlapping |
18738685282 |
23.82 % |
| LowQuality |
3909364984 |
4.97 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |