/EXTERNAL KNIH/mapping_coverage/K006255_1_lane_gembs
BACK
SAMPLE K006255_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1068137066 |
100% |
150416009039 |
100% |
| Mapped |
1045142479 |
97.85 % |
146943826402 |
97.69 % |
| Passed |
282378296 |
26.44 % |
31766434769 |
21.12 % |
| NotPassed |
762764183 |
71.41 % |
115177391633 |
76.57 % |
| |
|
|
|
|
| LowMAPQ |
548540238 |
51.35 % |
82829575938 |
55.07 % |
| MateUnmapped |
22994587 |
2.15 % |
3472182637 |
2.31 % |
| Duplicate |
178777205 |
16.74 % |
26995357955 |
17.95 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
292698 |
0.03 % |
44197398 |
0.03 % |
| |
|
|
|
|
| NotCorrectlyAligned |
35154042 |
3.29 % |
5308260342 |
3.53 % |
| Unmapped |
22994587 |
2.15 % |
3472182637 |
2.31 % |
Base Level Counts
| Bases |
# |
% |
| Total |
42322073734 |
100% |
| Passed |
29373506470 |
69.40 % |
| Trimmed |
1100067997 |
2.60 % |
| Clipped |
966226830 |
2.28 % |
| Overlapping |
9589412135 |
22.66 % |
| LowQuality |
1292860302 |
3.05 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |