/EXTERNAL KNIH/methylation/K006255_1_lane_gembs

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SAMPLE K006255_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25321411 11168485 44.11 %
NonRefCpG 486556 76186 15.66 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006255_1_lane_gembs_coverage_refCpG.png ./IMG//K006255_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006255_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006255_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006255_1_lane_gembs_quality_refcpg.png ./IMG//K006255_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006255_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 9123097 20.72 % 4666127 17.66 % 247939 32.29 % 43060 18.00 %
Intermediate (0.3-0.7) 13019619 29.57 % 6139919 23.24 % 245928 32.03 % 65771 27.50 %
Methylated (0.7-1) 21889418 49.71 % 15613278 59.10 % 273936 35.68 % 130339 54.50 %
Median Methylation 0.690 0.770 0.530 0.740