/EXTERNAL KNIH/K006256_1_lane_gembs/KEP20160002.Bisulfite-Seq.DNA_Methylation.EGAX00001573571.ADMSC02_WGBS

BACK

SAMPLE K006256_1_lane_gembs LANE KEP20160002.Bisulfite-Seq.DNA_Methylation.EGAX00001573571.ADMSC02_WGBS

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1093300360 100.00 % 546650180 100.00 % 546650180 100.00 %
General Reads 1040255109 95.15 % 532240274 97.36 % 508014835 92.93 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 7721062 0.71 % 3952662 0.72 % 3768400 0.69 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 45324189 4.15 % 10457244 1.91 % 34866945 6.38 %
Bisulfite_reads C2T 531273489 48.59 % 271655325 49.69 % 259618164 47.49 %
Bisulfite_reads G2A 516702682 47.26 % 264537611 48.39 % 252165071 46.13 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 234109767
Average Unique 42.83 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 57901690441 34.84 % 22892781093 27.55 % 35008909348 42.13 %
Base Counts Overall C 24177198367 14.55 % 4592436102 5.53 % 19584762265 23.57 %
Base Counts Overall G 27047270132 16.28 % 20377761443 24.52 % 6669508689 8.03 %
Base Counts Overall T 55936872048 33.66 % 34670318289 41.73 % 21266553759 25.59 %
Base Counts Overall N 1118623732 0.67 % 557530433 0.67 % 561093299 0.68 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.941299470675038
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 275705679



Mapping Quality

Mapping Quality Histogram
KEP20160002.Bisulfite-Seq.DNA_Methylation.EGAX00001573571.ADMSC02_WGBS.mapq.png



Read Length

Read Length Reads
151 546650180
151 546650180



Insert Size Plot

Insert Size Histogram
KEP20160002.Bisulfite-Seq.DNA_Methylation.EGAX00001573571.ADMSC02_WGBS.isize.png