/EXTERNAL KNIH/mapping_coverage/K006256_1_lane_gembs
BACK
SAMPLE K006256_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
965646949 |
100% |
131969160570 |
100% |
| Mapped |
934023189 |
96.73 % |
127193972810 |
96.38 % |
| Passed |
309510758 |
32.05 % |
32892595729 |
24.92 % |
| NotPassed |
624512431 |
64.67 % |
94301377081 |
71.46 % |
| |
|
|
|
|
| LowMAPQ |
499048564 |
51.68 % |
75356333164 |
57.10 % |
| MateUnmapped |
31623760 |
3.27 % |
4775187760 |
3.62 % |
| Duplicate |
81447974 |
8.43 % |
12298644074 |
9.32 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
175080 |
0.02 % |
26437080 |
0.02 % |
| |
|
|
|
|
| NotCorrectlyAligned |
43840813 |
4.54 % |
6619962763 |
5.02 % |
| Unmapped |
31623760 |
3.27 % |
4775187760 |
3.62 % |
Base Level Counts
| Bases |
# |
% |
| Total |
46557782133 |
100% |
| Passed |
29572678904 |
63.52 % |
| Trimmed |
1160856006 |
2.49 % |
| Clipped |
1052571646 |
2.26 % |
| Overlapping |
12612614758 |
27.09 % |
| LowQuality |
2159060819 |
4.64 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |