/EXTERNAL KNIH/methylation/K006256_1_lane_gembs

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SAMPLE K006256_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25733356 9947738 38.66 %
NonRefCpG 718061 70665 9.84 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006256_1_lane_gembs_coverage_refCpG.png ./IMG//K006256_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006256_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006256_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006256_1_lane_gembs_quality_refcpg.png ./IMG//K006256_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006256_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 10063001 21.59 % 4144637 15.97 % 540395 44.53 % 80756 26.12 %
Intermediate (0.3-0.7) 14775836 31.71 % 6712761 25.87 % 375325 30.93 % 95389 30.85 %
Methylated (0.7-1) 21763663 46.70 % 15093824 58.16 % 297939 24.55 % 133082 43.04 %
Median Methylation 0.660 0.760 0.370 0.620