/EXTERNAL DEEP/K008971_K008972_K008973_3_lane_gembs/41_Hm07.Bisulfite-Seq.DNA_methylation.EGAX00001612147.41

BACK

SAMPLE K008971_K008972_K008973_3_lane_gembs LANE 41_Hm07.Bisulfite-Seq.DNA_methylation.EGAX00001612147.41

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 437884246 100.00 % 218942123 100.00 % 218942123 100.00 %
General Reads 421354975 96.23 % 212185706 96.91 % 209169269 95.54 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 330408 0.08 % 167076 0.08 % 163332 0.07 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 16198863 3.70 % 6589341 3.01 % 9609522 4.39 %
Bisulfite_reads C2T 214257813 48.93 % 107858289 49.26 % 106399524 48.60 %
Bisulfite_reads G2A 207427570 47.37 % 104494493 47.73 % 102933077 47.01 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 128973543
Average Unique 58.91 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 15928575296 35.66 % 6225720782 27.88 % 9702854514 43.45 %
Base Counts Overall C 6336833581 14.19 % 854126218 3.82 % 5482707363 24.55 %
Base Counts Overall G 6803887384 15.23 % 5747597618 25.74 % 1056289766 4.73 %
Base Counts Overall T 15150629085 33.92 % 9284158074 41.57 % 5866471011 26.27 %
Base Counts Overall N 444267746 0.99 % 220493854 0.99 % 223773892 1.00 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9790613436873572
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 152212730



Mapping Quality

Mapping Quality Histogram
41_Hm07.Bisulfite-Seq.DNA_methylation.EGAX00001612147.41.mapq.png



Read Length

Read Length Reads
101 218942123
101 218942123



Insert Size Plot

Insert Size Histogram
41_Hm07.Bisulfite-Seq.DNA_methylation.EGAX00001612147.41.isize.png