/EXTERNAL DEEP/K008971_K008972_K008973_3_lane_gembs/41_Hm07.Bisulfite-Seq.DNA_methylation.EGAX00001612295.41

BACK

SAMPLE K008971_K008972_K008973_3_lane_gembs LANE 41_Hm07.Bisulfite-Seq.DNA_methylation.EGAX00001612295.41

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 376082940 100.00 % 188041470 100.00 % 188041470 100.00 %
General Reads 332488659 88.41 % 167042909 88.83 % 165445750 87.98 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 189637 0.05 % 96017 0.05 % 93620 0.05 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 43404644 11.54 % 20902544 11.12 % 22502100 11.97 %
Bisulfite_reads C2T 170877879 45.44 % 85839087 45.65 % 85038792 45.22 %
Bisulfite_reads G2A 161800417 43.02 % 81299839 43.24 % 80500578 42.81 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 131603595
Average Unique 69.99 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 14804325068 38.59 % 6591840265 34.37 % 8212484803 42.82 %
Base Counts Overall C 4642408583 12.10 % 621013012 3.24 % 4021395571 20.97 %
Base Counts Overall G 4365434852 11.38 % 3796235969 19.79 % 569198883 2.97 %
Base Counts Overall T 14154657065 36.90 % 7976202058 41.59 % 6178455007 32.21 %
Base Counts Overall N 393634312 1.03 % 194938636 1.02 % 198695676 1.04 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9929101171321912
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 152858580



Mapping Quality

Mapping Quality Histogram
41_Hm07.Bisulfite-Seq.DNA_methylation.EGAX00001612295.41.mapq.png



Read Length

Read Length Reads
101 188041470
101 188041470



Insert Size Plot

Insert Size Histogram
41_Hm07.Bisulfite-Seq.DNA_methylation.EGAX00001612295.41.isize.png