/EXTERNAL DEEP/K008971_K008972_K008973_3_lane_gembs/41_Hm07.Bisulfite-Seq.DNA_methylation.EGAX00001612349.41

BACK

SAMPLE K008971_K008972_K008973_3_lane_gembs LANE 41_Hm07.Bisulfite-Seq.DNA_methylation.EGAX00001612349.41

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 383247068 100.00 % 191623534 100.00 % 191623534 100.00 %
General Reads 339513569 88.59 % 170783065 89.12 % 168730504 88.05 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 192448 0.05 % 97475 0.05 % 94973 0.05 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 43541051 11.36 % 20742994 10.82 % 22798057 11.90 %
Bisulfite_reads C2T 174422254 45.51 % 87738010 45.79 % 86684244 45.24 %
Bisulfite_reads G2A 165283763 43.13 % 83142530 43.39 % 82141233 42.87 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 134576275
Average Unique 70.23 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 15088240333 38.60 % 6721285475 34.39 % 8366954858 42.81 %
Base Counts Overall C 4713555315 12.06 % 622055980 3.18 % 4091499335 20.93 %
Base Counts Overall G 4445524459 11.37 % 3863221404 19.77 % 582303055 2.98 %
Base Counts Overall T 14450543399 36.97 % 8144888292 41.67 % 6305655107 32.26 %
Base Counts Overall N 393337430 1.01 % 194149317 0.99 % 199188113 1.02 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9922366570617492
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 156199406



Mapping Quality

Mapping Quality Histogram
41_Hm07.Bisulfite-Seq.DNA_methylation.EGAX00001612349.41.mapq.png



Read Length

Read Length Reads
101 191623534
101 191623534



Insert Size Plot

Insert Size Histogram
41_Hm07.Bisulfite-Seq.DNA_methylation.EGAX00001612349.41.isize.png