/EXTERNAL DEEP/mapping_coverage/K008971_K008972_K008973_3_lane_gembs
BACK
SAMPLE K008971_K008972_K008973_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1040761495 |
100% |
100278155083 |
100% |
| Mapped |
1017757120 |
97.79 % |
97954713208 |
97.68 % |
| Passed |
689037837 |
66.21 % |
64754065625 |
64.57 % |
| NotPassed |
328719283 |
31.58 % |
33200647583 |
33.11 % |
| |
|
|
|
|
| LowMAPQ |
226510920 |
21.76 % |
22877602920 |
22.81 % |
| MateUnmapped |
23004375 |
2.21 % |
2323441875 |
2.32 % |
| Duplicate |
53495483 |
5.14 % |
5403043783 |
5.39 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
30306 |
0.00 % |
3060906 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
48682574 |
4.68 % |
4916939974 |
4.90 % |
| Unmapped |
23004375 |
2.21 % |
2323441875 |
2.32 % |
Base Level Counts
| Bases |
# |
% |
| Total |
69563776260 |
100% |
| Passed |
60221297676 |
86.57 % |
| Trimmed |
3197393822 |
4.60 % |
| Clipped |
283819973 |
0.41 % |
| Overlapping |
4525890662 |
6.51 % |
| LowQuality |
1335374127 |
1.92 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |