/EXTERNAL DEEP/methylation/K008971_K008972_K008973_3_lane_gembs
BACK
SAMPLE K008971_K008972_K008973_3_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26147267 |
15992251 |
61.16 % |
| NonRefCpG |
336430 |
131415 |
39.06 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
7261058 |
14.50 % |
3583018 |
9.55 % |
147436 |
24.14 % |
45353 |
12.60 % |
| Intermediate (0.3-0.7) |
13014879 |
25.99 % |
8498402 |
22.66 % |
174431 |
28.56 % |
93689 |
26.03 % |
| Methylated (0.7-1) |
29808266 |
59.52 % |
25423242 |
67.79 % |
288934 |
47.30 % |
220872 |
61.37 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.770 |
|
0.820 |
|
0.670 |
|
0.780 |
|