/EXTERNAL DEEP/K008974_K008975_K008976_K008977_K008978_K008979_K008980_K008981_7_lane_gembs/51_Hf13.Bisulfite-Seq.DNA_methylation.EGAX00001612465.51

BACK

SAMPLE K008974_K008975_K008976_K008977_K008978_K008979_K008980_K008981_7_lane_gembs LANE 51_Hf13.Bisulfite-Seq.DNA_methylation.EGAX00001612465.51

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 252106594 100.00 % 126053297 100.00 % 126053297 100.00 %
General Reads 234557183 93.04 % 118249845 93.81 % 116307338 92.27 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1015055 0.40 % 514761 0.41 % 500294 0.40 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 16534356 6.56 % 7288691 5.78 % 9245665 7.33 %
Bisulfite_reads C2T 121056439 48.02 % 61008910 48.40 % 60047529 47.64 %
Bisulfite_reads G2A 114515799 45.42 % 57755696 45.82 % 56760103 45.03 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 76221142
Average Unique 60.47 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 8995296726 34.98 % 3635924573 28.28 % 5359372153 41.68 %
Base Counts Overall C 3857628292 15.00 % 772277020 6.01 % 3085351272 24.00 %
Base Counts Overall G 4052086370 15.76 % 3193829039 24.84 % 858257331 6.68 %
Base Counts Overall T 8542234377 33.22 % 5129082591 39.89 % 3413151786 26.55 %
Base Counts Overall N 267626823 1.04 % 126323071 0.98 % 141303752 1.10 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9434122092601323
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 91286652



Mapping Quality

Mapping Quality Histogram
51_Hf13.Bisulfite-Seq.DNA_methylation.EGAX00001612465.51.mapq.png



Read Length

Read Length Reads
101 126053297
101 126053297



Insert Size Plot

Insert Size Histogram
51_Hf13.Bisulfite-Seq.DNA_methylation.EGAX00001612465.51.isize.png