Sample K008974_K008975_K008976_K008977_K008978_K008979_K008980_K008981_7_lane_gembs
===================================================================================

Mapping Stats (Reads)
---------------------

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |1261323283                                  |100.00 %                                    |652447852                                   |100.00 %                                    |608875431                                   |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |1223174664                                  |96.98 %                                     |636295927                                   |97.52 %                                     |586878737                                   |96.39 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |1297302                                     |0.10 %                                      |661606                                      |0.10 %                                      |635696                                      |0.10 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |36851317                                    |2.92 %                                      |15490319                                    |2.37 %                                      |21360998                                    |3.51 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |635438549                                   |50.38 %                                     |330232258                                   |50.61 %                                     |305206291                                   |50.13 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |589033417                                   |46.70 %                                     |306725275                                   |47.01 %                                     |282308142                                   |46.37 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
----------------------

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |370540015                                  |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |56.85 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
---------------------

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |37888535020                                 |37.02 %                                     |15000783734                                 |29.05 %                                     |22887751286                                 |45.14 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |12625850931                                 |12.34 %                                     |1337344039                                  |2.59 %                                      |11288506892                                 |22.26 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |13126701248                                 |12.83 %                                     |11754772250                                 |22.76 %                                     |1371928998                                  |2.71 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |37249390298                                 |36.40 %                                     |22888369840                                 |44.32 %                                     |14361020458                                 |28.32 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |1453858900                                  |1.42 %                                      |660906829                                   |1.28 %                                      |792952071                                   |1.56 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
-------------------------

.. image:: K008974_K008975_K008976_K008977_K008978_K008979_K008980_K008981_7_lane_gembs_mapq.png

Bisulfite Conversion Rate
-------------------------

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |0.9437458690782274                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
---------------------

.. image:: K008974_K008975_K008976_K008977_K008978_K008979_K008980_K008981_7_lane_gembs_isize.png

Correct Pairs
-------------

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |428513164                                  |
+--------------------------------------------+-------------------------------------------+

Sample K008974_K008975_K008976_K008977_K008978_K008979_K008980_K008981_7_lane_gembs Lane 51_Hf13.Bisulfite-Seq.DNA_methylation.EGAX00001612373.51
-------------------------------------------------------------------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |350815286                                   |100.00 %                                    |175407643                                   |100.00 %                                    |175407643                                   |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |344017554                                   |98.06 %                                     |172273548                                   |98.21 %                                     |171744006                                   |97.91 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |431                                         |0.00 %                                      |224                                         |0.00 %                                      |207                                         |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |6797301                                     |1.94 %                                      |3133871                                     |1.79 %                                      |3663430                                     |2.09 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |178781800                                   |50.96 %                                     |89526097                                    |51.04 %                                     |89255703                                    |50.88 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |165236185                                   |47.10 %                                     |82747675                                    |47.17 %                                     |82488510                                    |47.03 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |84056671                                   |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |47.92 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |11138601689                                 |38.49 %                                     |4106687849                                  |29.48 %                                     |7031913840                                  |46.86 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |3381939789                                  |11.69 %                                     |158709638                                   |1.14 %                                      |3223230151                                  |21.48 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |3182847582                                  |11.00 %                                     |3049209240                                  |21.89 %                                     |133638342                                   |0.89 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |10846938328                                 |37.49 %                                     |6436359488                                  |46.21 %                                     |4410578840                                  |29.39 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |385478081                                   |1.33 %                                      |177456766                                   |1.27 %                                      |208021315                                   |1.39 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |0.044808873028161535                       |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Correct Pairs
^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |107483291                                  |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: 51_Hf13.Bisulfite-Seq.DNA_methylation.EGAX00001612373.51_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|82                                          |1474693                                    |
+--------------------------------------------+-------------------------------------------+
|95                                          |3557347                                    |
+--------------------------------------------+-------------------------------------------+
|33                                          |522772                                     |
+--------------------------------------------+-------------------------------------------+
|80                                          |1750524                                    |
+--------------------------------------------+-------------------------------------------+
|66                                          |1762617                                    |
+--------------------------------------------+-------------------------------------------+
|98                                          |30170177                                   |
+--------------------------------------------+-------------------------------------------+
|23                                          |407486                                     |
+--------------------------------------------+-------------------------------------------+
|53                                          |1556310                                    |
+--------------------------------------------+-------------------------------------------+
|65                                          |1754407                                    |
+--------------------------------------------+-------------------------------------------+
|20                                          |383342                                     |
+--------------------------------------------+-------------------------------------------+
|97                                          |25224717                                   |
+--------------------------------------------+-------------------------------------------+
|27                                          |398619                                     |
+--------------------------------------------+-------------------------------------------+
|25                                          |396983                                     |
+--------------------------------------------+-------------------------------------------+
|76                                          |1777632                                    |
+--------------------------------------------+-------------------------------------------+
|34                                          |523265                                     |
+--------------------------------------------+-------------------------------------------+
|30                                          |411525                                     |
+--------------------------------------------+-------------------------------------------+
|49                                          |1495278                                    |
+--------------------------------------------+-------------------------------------------+
|59                                          |1667911                                    |
+--------------------------------------------+-------------------------------------------+
|86                                          |1539076                                    |
+--------------------------------------------+-------------------------------------------+
|51                                          |1492614                                    |
+--------------------------------------------+-------------------------------------------+
|79                                          |1825033                                    |
+--------------------------------------------+-------------------------------------------+
|50                                          |1477548                                    |
+--------------------------------------------+-------------------------------------------+
|89                                          |3573317                                    |
+--------------------------------------------+-------------------------------------------+
|71                                          |1738545                                    |
+--------------------------------------------+-------------------------------------------+
|41                                          |1014009                                    |
+--------------------------------------------+-------------------------------------------+
|62                                          |1731430                                    |
+--------------------------------------------+-------------------------------------------+
|67                                          |1815078                                    |
+--------------------------------------------+-------------------------------------------+
|44                                          |1288716                                    |
+--------------------------------------------+-------------------------------------------+
|37                                          |709571                                     |
+--------------------------------------------+-------------------------------------------+
|92                                          |778262                                     |
+--------------------------------------------+-------------------------------------------+
|60                                          |1683836                                    |
+--------------------------------------------+-------------------------------------------+
|31                                          |464049                                     |
+--------------------------------------------+-------------------------------------------+
|48                                          |1443630                                    |
+--------------------------------------------+-------------------------------------------+
|21                                          |415098                                     |
+--------------------------------------------+-------------------------------------------+
|22                                          |370101                                     |
+--------------------------------------------+-------------------------------------------+
|52                                          |1549131                                    |
+--------------------------------------------+-------------------------------------------+
|77                                          |1821961                                    |
+--------------------------------------------+-------------------------------------------+
|87                                          |1795444                                    |
+--------------------------------------------+-------------------------------------------+
|28                                          |396611                                     |
+--------------------------------------------+-------------------------------------------+
|70                                          |1765459                                    |
+--------------------------------------------+-------------------------------------------+
|74                                          |1751364                                    |
+--------------------------------------------+-------------------------------------------+
|42                                          |1111012                                    |
+--------------------------------------------+-------------------------------------------+
|90                                          |8049287                                    |
+--------------------------------------------+-------------------------------------------+
|78                                          |1771496                                    |
+--------------------------------------------+-------------------------------------------+
|69                                          |1789756                                    |
+--------------------------------------------+-------------------------------------------+
|56                                          |1678641                                    |
+--------------------------------------------+-------------------------------------------+
|39                                          |871913                                     |
+--------------------------------------------+-------------------------------------------+
|35                                          |563700                                     |
+--------------------------------------------+-------------------------------------------+
|96                                          |6668810                                    |
+--------------------------------------------+-------------------------------------------+
|84                                          |1266312                                    |
+--------------------------------------------+-------------------------------------------+
|40                                          |921278                                     |
+--------------------------------------------+-------------------------------------------+
|54                                          |1614415                                    |
+--------------------------------------------+-------------------------------------------+
|58                                          |1671644                                    |
+--------------------------------------------+-------------------------------------------+
|73                                          |1715975                                    |
+--------------------------------------------+-------------------------------------------+
|46                                          |1412382                                    |
+--------------------------------------------+-------------------------------------------+
|91                                          |4594263                                    |
+--------------------------------------------+-------------------------------------------+
|55                                          |1663412                                    |
+--------------------------------------------+-------------------------------------------+
|63                                          |1698343                                    |
+--------------------------------------------+-------------------------------------------+
|47                                          |1471543                                    |
+--------------------------------------------+-------------------------------------------+
|45                                          |1333063                                    |
+--------------------------------------------+-------------------------------------------+
|43                                          |1201404                                    |
+--------------------------------------------+-------------------------------------------+
|36                                          |644050                                     |
+--------------------------------------------+-------------------------------------------+
|83                                          |1169639                                    |
+--------------------------------------------+-------------------------------------------+
|29                                          |408066                                     |
+--------------------------------------------+-------------------------------------------+
|24                                          |399828                                     |
+--------------------------------------------+-------------------------------------------+
|61                                          |1664208                                    |
+--------------------------------------------+-------------------------------------------+
|64                                          |1730111                                    |
+--------------------------------------------+-------------------------------------------+
|32                                          |428670                                     |
+--------------------------------------------+-------------------------------------------+
|94                                          |2232627                                    |
+--------------------------------------------+-------------------------------------------+
|75                                          |1801160                                    |
+--------------------------------------------+-------------------------------------------+
|38                                          |799695                                     |
+--------------------------------------------+-------------------------------------------+
|26                                          |426195                                     |
+--------------------------------------------+-------------------------------------------+
|93                                          |2324650                                    |
+--------------------------------------------+-------------------------------------------+
|88                                          |2389140                                    |
+--------------------------------------------+-------------------------------------------+
|57                                          |1707420                                    |
+--------------------------------------------+-------------------------------------------+
|81                                          |1620517                                    |
+--------------------------------------------+-------------------------------------------+
|68                                          |1767262                                    |
+--------------------------------------------+-------------------------------------------+
|72                                          |1756889                                    |
+--------------------------------------------+-------------------------------------------+
|85                                          |1393379                                    |
+--------------------------------------------+-------------------------------------------+
|82                                          |1426759                                    |
+--------------------------------------------+-------------------------------------------+
|95                                          |3693214                                    |
+--------------------------------------------+-------------------------------------------+
|33                                          |136191                                     |
+--------------------------------------------+-------------------------------------------+
|80                                          |1449102                                    |
+--------------------------------------------+-------------------------------------------+
|99                                          |57695176                                   |
+--------------------------------------------+-------------------------------------------+
|66                                          |1472534                                    |
+--------------------------------------------+-------------------------------------------+
|98                                          |20147361                                   |
+--------------------------------------------+-------------------------------------------+
|23                                          |46429                                      |
+--------------------------------------------+-------------------------------------------+
|53                                          |1275029                                    |
+--------------------------------------------+-------------------------------------------+
|65                                          |1476442                                    |
+--------------------------------------------+-------------------------------------------+
|20                                          |43740                                      |
+--------------------------------------------+-------------------------------------------+
|97                                          |8016444                                    |
+--------------------------------------------+-------------------------------------------+
|27                                          |77595                                      |
+--------------------------------------------+-------------------------------------------+
|25                                          |60023                                      |
+--------------------------------------------+-------------------------------------------+
|76                                          |1498477                                    |
+--------------------------------------------+-------------------------------------------+
|34                                          |191090                                     |
+--------------------------------------------+-------------------------------------------+
|30                                          |97605                                      |
+--------------------------------------------+-------------------------------------------+
|49                                          |1195516                                    |
+--------------------------------------------+-------------------------------------------+
|59                                          |1375104                                    |
+--------------------------------------------+-------------------------------------------+
|86                                          |1377945                                    |
+--------------------------------------------+-------------------------------------------+
|51                                          |1197931                                    |
+--------------------------------------------+-------------------------------------------+
|79                                          |1503605                                    |
+--------------------------------------------+-------------------------------------------+
|50                                          |1177288                                    |
+--------------------------------------------+-------------------------------------------+
|89                                          |1466513                                    |
+--------------------------------------------+-------------------------------------------+
|71                                          |1434905                                    |
+--------------------------------------------+-------------------------------------------+
|41                                          |721935                                     |
+--------------------------------------------+-------------------------------------------+
|62                                          |1437804                                    |
+--------------------------------------------+-------------------------------------------+
|67                                          |1532249                                    |
+--------------------------------------------+-------------------------------------------+
|44                                          |995309                                     |
+--------------------------------------------+-------------------------------------------+
|37                                          |428435                                     |
+--------------------------------------------+-------------------------------------------+
|92                                          |1442075                                    |
+--------------------------------------------+-------------------------------------------+
|60                                          |1400188                                    |
+--------------------------------------------+-------------------------------------------+
|31                                          |102022                                     |
+--------------------------------------------+-------------------------------------------+
|48                                          |1169631                                    |
+--------------------------------------------+-------------------------------------------+
|21                                          |42950                                      |
+--------------------------------------------+-------------------------------------------+
|22                                          |44865                                      |
+--------------------------------------------+-------------------------------------------+
|52                                          |1260437                                    |
+--------------------------------------------+-------------------------------------------+
|77                                          |1550762                                    |
+--------------------------------------------+-------------------------------------------+
|87                                          |1429386                                    |
+--------------------------------------------+-------------------------------------------+
|28                                          |87597                                      |
+--------------------------------------------+-------------------------------------------+
|70                                          |1475600                                    |
+--------------------------------------------+-------------------------------------------+
|74                                          |1471227                                    |
+--------------------------------------------+-------------------------------------------+
|42                                          |829949                                     |
+--------------------------------------------+-------------------------------------------+
|90                                          |1535319                                    |
+--------------------------------------------+-------------------------------------------+
|78                                          |1496081                                    |
+--------------------------------------------+-------------------------------------------+
|69                                          |1505933                                    |
+--------------------------------------------+-------------------------------------------+
|56                                          |1395283                                    |
+--------------------------------------------+-------------------------------------------+
|39                                          |573736                                     |
+--------------------------------------------+-------------------------------------------+
|35                                          |256449                                     |
+--------------------------------------------+-------------------------------------------+
|96                                          |7883935                                    |
+--------------------------------------------+-------------------------------------------+
|84                                          |1354212                                    |
+--------------------------------------------+-------------------------------------------+
|40                                          |643391                                     |
+--------------------------------------------+-------------------------------------------+
|54                                          |1333861                                    |
+--------------------------------------------+-------------------------------------------+
|58                                          |1387020                                    |
+--------------------------------------------+-------------------------------------------+
|73                                          |1427485                                    |
+--------------------------------------------+-------------------------------------------+
|46                                          |1122420                                    |
+--------------------------------------------+-------------------------------------------+
|91                                          |1502878                                    |
+--------------------------------------------+-------------------------------------------+
|55                                          |1384147                                    |
+--------------------------------------------+-------------------------------------------+
|63                                          |1415516                                    |
+--------------------------------------------+-------------------------------------------+
|47                                          |1188517                                    |
+--------------------------------------------+-------------------------------------------+
|45                                          |1078450                                    |
+--------------------------------------------+-------------------------------------------+
|43                                          |914605                                     |
+--------------------------------------------+-------------------------------------------+
|36                                          |339448                                     |
+--------------------------------------------+-------------------------------------------+
|83                                          |1332557                                    |
+--------------------------------------------+-------------------------------------------+
|29                                          |91641                                      |
+--------------------------------------------+-------------------------------------------+
|24                                          |53459                                      |
+--------------------------------------------+-------------------------------------------+
|61                                          |1373540                                    |
+--------------------------------------------+-------------------------------------------+
|64                                          |1451661                                    |
+--------------------------------------------+-------------------------------------------+
|32                                          |117533                                     |
+--------------------------------------------+-------------------------------------------+
|94                                          |1967196                                    |
+--------------------------------------------+-------------------------------------------+
|75                                          |1519079                                    |
+--------------------------------------------+-------------------------------------------+
|38                                          |506207                                     |
+--------------------------------------------+-------------------------------------------+
|26                                          |70287                                      |
+--------------------------------------------+-------------------------------------------+
|93                                          |1644575                                    |
+--------------------------------------------+-------------------------------------------+
|88                                          |1418055                                    |
+--------------------------------------------+-------------------------------------------+
|57                                          |1420417                                    |
+--------------------------------------------+-------------------------------------------+
|81                                          |1426319                                    |
+--------------------------------------------+-------------------------------------------+
|68                                          |1480425                                    |
+--------------------------------------------+-------------------------------------------+
|72                                          |1467302                                    |
+--------------------------------------------+-------------------------------------------+
|85                                          |1374265                                    |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
^^^^^^^^^^^^^^^^^^^^^

.. image:: 51_Hf13.Bisulfite-Seq.DNA_methylation.EGAX00001612373.51_isize.png

Sample K008974_K008975_K008976_K008977_K008978_K008979_K008980_K008981_7_lane_gembs Lane 51_Hf13.Bisulfite-Seq.DNA_methylation.EGAX00001612466.51
-------------------------------------------------------------------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |41707922                                    |100.00 %                                    |20853961                                    |100.00 %                                    |20853961                                    |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |37220075                                    |89.24 %                                     |19377167                                    |92.92 %                                     |17842908                                    |85.56 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |141274                                      |0.34 %                                      |73805                                       |0.35 %                                      |67469                                       |0.32 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |4346573                                     |10.42 %                                     |1402989                                     |6.73 %                                      |2943584                                     |14.12 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |19186542                                    |46.00 %                                     |9974132                                     |47.83 %                                     |9212410                                     |44.18 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |18174807                                    |43.58 %                                     |9476840                                     |45.44 %                                     |8697967                                     |41.71 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |11605037                                   |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |55.65 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |1486938007                                  |34.95 %                                     |610064474                                   |28.68 %                                     |876873533                                   |41.22 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |600999385                                   |14.13 %                                     |109914740                                   |5.17 %                                      |491084645                                   |23.09 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |612872002                                   |14.41 %                                     |496673604                                   |23.35 %                                     |116198398                                   |5.46 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |1445602421                                  |33.98 %                                     |887699824                                   |41.73 %                                     |557902597                                   |26.23 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |107796229                                   |2.53 %                                      |22751380                                    |1.07 %                                      |85044849                                    |4.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |0.946460787753106                          |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Correct Pairs
^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |14082983                                   |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: 51_Hf13.Bisulfite-Seq.DNA_methylation.EGAX00001612466.51_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|101                                         |20853961                                   |
+--------------------------------------------+-------------------------------------------+
|101                                         |20853961                                   |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
^^^^^^^^^^^^^^^^^^^^^

.. image:: 51_Hf13.Bisulfite-Seq.DNA_methylation.EGAX00001612466.51_isize.png

Sample K008974_K008975_K008976_K008977_K008978_K008979_K008980_K008981_7_lane_gembs Lane 51_Hf13.Bisulfite-Seq.DNA_methylation.EGAX00001612155.51
-------------------------------------------------------------------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |284234648                                   |100.00 %                                    |142117324                                   |100.00 %                                    |142117324                                   |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |281964396                                   |99.20 %                                     |141131334                                   |99.31 %                                     |140833062                                   |99.10 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |2270252                                     |0.80 %                                      |985990                                      |0.69 %                                      |1284262                                     |0.90 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |146586563                                   |51.57 %                                     |73370017                                    |51.63 %                                     |73216546                                    |51.52 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |135377833                                   |47.63 %                                     |67761317                                    |47.68 %                                     |67616516                                    |47.58 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |68386775                                   |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |48.12 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |9006498649                                  |38.55 %                                     |3303593409                                  |29.38 %                                     |5702905240                                  |47.05 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |2712352811                                  |11.61 %                                     |102825048                                   |0.91 %                                      |2609527763                                  |21.53 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |2571803219                                  |11.01 %                                     |2472515083                                  |21.99 %                                     |99288136                                    |0.82 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |8771212992                                  |37.54 %                                     |5222027109                                  |46.45 %                                     |3549185883                                  |29.28 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |302226287                                   |1.29 %                                      |142237056                                   |1.27 %                                      |159989231                                   |1.32 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |NA                                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Correct Pairs
^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |87723529                                   |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: 51_Hf13.Bisulfite-Seq.DNA_methylation.EGAX00001612155.51_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|82                                          |1218493                                    |
+--------------------------------------------+-------------------------------------------+
|95                                          |2855502                                    |
+--------------------------------------------+-------------------------------------------+
|33                                          |424376                                     |
+--------------------------------------------+-------------------------------------------+
|80                                          |1444082                                    |
+--------------------------------------------+-------------------------------------------+
|66                                          |1453240                                    |
+--------------------------------------------+-------------------------------------------+
|98                                          |23643274                                   |
+--------------------------------------------+-------------------------------------------+
|23                                          |329450                                     |
+--------------------------------------------+-------------------------------------------+
|53                                          |1284546                                    |
+--------------------------------------------+-------------------------------------------+
|65                                          |1446780                                    |
+--------------------------------------------+-------------------------------------------+
|20                                          |304567                                     |
+--------------------------------------------+-------------------------------------------+
|97                                          |20148867                                   |
+--------------------------------------------+-------------------------------------------+
|27                                          |321505                                     |
+--------------------------------------------+-------------------------------------------+
|25                                          |319072                                     |
+--------------------------------------------+-------------------------------------------+
|76                                          |1467257                                    |
+--------------------------------------------+-------------------------------------------+
|34                                          |428728                                     |
+--------------------------------------------+-------------------------------------------+
|30                                          |334780                                     |
+--------------------------------------------+-------------------------------------------+
|49                                          |1237276                                    |
+--------------------------------------------+-------------------------------------------+
|59                                          |1377180                                    |
+--------------------------------------------+-------------------------------------------+
|86                                          |1261388                                    |
+--------------------------------------------+-------------------------------------------+
|51                                          |1233969                                    |
+--------------------------------------------+-------------------------------------------+
|79                                          |1501843                                    |
+--------------------------------------------+-------------------------------------------+
|50                                          |1222704                                    |
+--------------------------------------------+-------------------------------------------+
|89                                          |2903560                                    |
+--------------------------------------------+-------------------------------------------+
|71                                          |1431745                                    |
+--------------------------------------------+-------------------------------------------+
|41                                          |839150                                     |
+--------------------------------------------+-------------------------------------------+
|62                                          |1430365                                    |
+--------------------------------------------+-------------------------------------------+
|67                                          |1501693                                    |
+--------------------------------------------+-------------------------------------------+
|44                                          |1068495                                    |
+--------------------------------------------+-------------------------------------------+
|37                                          |585507                                     |
+--------------------------------------------+-------------------------------------------+
|92                                          |595020                                     |
+--------------------------------------------+-------------------------------------------+
|60                                          |1389664                                    |
+--------------------------------------------+-------------------------------------------+
|31                                          |376841                                     |
+--------------------------------------------+-------------------------------------------+
|48                                          |1196019                                    |
+--------------------------------------------+-------------------------------------------+
|21                                          |330924                                     |
+--------------------------------------------+-------------------------------------------+
|22                                          |295328                                     |
+--------------------------------------------+-------------------------------------------+
|52                                          |1281731                                    |
+--------------------------------------------+-------------------------------------------+
|77                                          |1505309                                    |
+--------------------------------------------+-------------------------------------------+
|87                                          |1465494                                    |
+--------------------------------------------+-------------------------------------------+
|28                                          |322174                                     |
+--------------------------------------------+-------------------------------------------+
|70                                          |1454321                                    |
+--------------------------------------------+-------------------------------------------+
|74                                          |1444488                                    |
+--------------------------------------------+-------------------------------------------+
|42                                          |917725                                     |
+--------------------------------------------+-------------------------------------------+
|90                                          |6594820                                    |
+--------------------------------------------+-------------------------------------------+
|78                                          |1460348                                    |
+--------------------------------------------+-------------------------------------------+
|69                                          |1475879                                    |
+--------------------------------------------+-------------------------------------------+
|56                                          |1386551                                    |
+--------------------------------------------+-------------------------------------------+
|39                                          |720930                                     |
+--------------------------------------------+-------------------------------------------+
|35                                          |460506                                     |
+--------------------------------------------+-------------------------------------------+
|96                                          |5321251                                    |
+--------------------------------------------+-------------------------------------------+
|84                                          |1039767                                    |
+--------------------------------------------+-------------------------------------------+
|40                                          |759641                                     |
+--------------------------------------------+-------------------------------------------+
|54                                          |1336190                                    |
+--------------------------------------------+-------------------------------------------+
|58                                          |1378913                                    |
+--------------------------------------------+-------------------------------------------+
|73                                          |1413301                                    |
+--------------------------------------------+-------------------------------------------+
|46                                          |1174198                                    |
+--------------------------------------------+-------------------------------------------+
|91                                          |3749956                                    |
+--------------------------------------------+-------------------------------------------+
|55                                          |1373370                                    |
+--------------------------------------------+-------------------------------------------+
|63                                          |1401571                                    |
+--------------------------------------------+-------------------------------------------+
|47                                          |1220364                                    |
+--------------------------------------------+-------------------------------------------+
|45                                          |1108977                                    |
+--------------------------------------------+-------------------------------------------+
|43                                          |994703                                     |
+--------------------------------------------+-------------------------------------------+
|36                                          |530162                                     |
+--------------------------------------------+-------------------------------------------+
|83                                          |964386                                     |
+--------------------------------------------+-------------------------------------------+
|29                                          |332370                                     |
+--------------------------------------------+-------------------------------------------+
|24                                          |321428                                     |
+--------------------------------------------+-------------------------------------------+
|61                                          |1372339                                    |
+--------------------------------------------+-------------------------------------------+
|64                                          |1426075                                    |
+--------------------------------------------+-------------------------------------------+
|32                                          |347037                                     |
+--------------------------------------------+-------------------------------------------+
|94                                          |1768357                                    |
+--------------------------------------------+-------------------------------------------+
|75                                          |1483748                                    |
+--------------------------------------------+-------------------------------------------+
|38                                          |659077                                     |
+--------------------------------------------+-------------------------------------------+
|26                                          |343449                                     |
+--------------------------------------------+-------------------------------------------+
|93                                          |1870236                                    |
+--------------------------------------------+-------------------------------------------+
|88                                          |1941158                                    |
+--------------------------------------------+-------------------------------------------+
|57                                          |1411164                                    |
+--------------------------------------------+-------------------------------------------+
|81                                          |1335582                                    |
+--------------------------------------------+-------------------------------------------+
|68                                          |1454562                                    |
+--------------------------------------------+-------------------------------------------+
|72                                          |1445592                                    |
+--------------------------------------------+-------------------------------------------+
|85                                          |1144934                                    |
+--------------------------------------------+-------------------------------------------+
|82                                          |1176579                                    |
+--------------------------------------------+-------------------------------------------+
|95                                          |2952058                                    |
+--------------------------------------------+-------------------------------------------+
|33                                          |111366                                     |
+--------------------------------------------+-------------------------------------------+
|80                                          |1193227                                    |
+--------------------------------------------+-------------------------------------------+
|99                                          |46133278                                   |
+--------------------------------------------+-------------------------------------------+
|66                                          |1218283                                    |
+--------------------------------------------+-------------------------------------------+
|98                                          |16040434                                   |
+--------------------------------------------+-------------------------------------------+
|23                                          |34972                                      |
+--------------------------------------------+-------------------------------------------+
|53                                          |1056894                                    |
+--------------------------------------------+-------------------------------------------+
|65                                          |1222779                                    |
+--------------------------------------------+-------------------------------------------+
|20                                          |32317                                      |
+--------------------------------------------+-------------------------------------------+
|97                                          |6379468                                    |
+--------------------------------------------+-------------------------------------------+
|27                                          |60998                                      |
+--------------------------------------------+-------------------------------------------+
|25                                          |46614                                      |
+--------------------------------------------+-------------------------------------------+
|76                                          |1238737                                    |
+--------------------------------------------+-------------------------------------------+
|34                                          |157860                                     |
+--------------------------------------------+-------------------------------------------+
|30                                          |77919                                      |
+--------------------------------------------+-------------------------------------------+
|49                                          |993171                                     |
+--------------------------------------------+-------------------------------------------+
|59                                          |1141454                                    |
+--------------------------------------------+-------------------------------------------+
|86                                          |1131466                                    |
+--------------------------------------------+-------------------------------------------+
|51                                          |995464                                     |
+--------------------------------------------+-------------------------------------------+
|79                                          |1239904                                    |
+--------------------------------------------+-------------------------------------------+
|50                                          |979035                                     |
+--------------------------------------------+-------------------------------------------+
|89                                          |1200373                                    |
+--------------------------------------------+-------------------------------------------+
|71                                          |1183577                                    |
+--------------------------------------------+-------------------------------------------+
|41                                          |597841                                     |
+--------------------------------------------+-------------------------------------------+
|62                                          |1191628                                    |
+--------------------------------------------+-------------------------------------------+
|67                                          |1271867                                    |
+--------------------------------------------+-------------------------------------------+
|44                                          |822763                                     |
+--------------------------------------------+-------------------------------------------+
|37                                          |355105                                     |
+--------------------------------------------+-------------------------------------------+
|92                                          |1176169                                    |
+--------------------------------------------+-------------------------------------------+
|60                                          |1159232                                    |
+--------------------------------------------+-------------------------------------------+
|31                                          |82806                                      |
+--------------------------------------------+-------------------------------------------+
|48                                          |970807                                     |
+--------------------------------------------+-------------------------------------------+
|21                                          |31856                                      |
+--------------------------------------------+-------------------------------------------+
|22                                          |33378                                      |
+--------------------------------------------+-------------------------------------------+
|52                                          |1048496                                    |
+--------------------------------------------+-------------------------------------------+
|77                                          |1281682                                    |
+--------------------------------------------+-------------------------------------------+
|87                                          |1172736                                    |
+--------------------------------------------+-------------------------------------------+
|28                                          |69110                                      |
+--------------------------------------------+-------------------------------------------+
|70                                          |1223080                                    |
+--------------------------------------------+-------------------------------------------+
|74                                          |1217144                                    |
+--------------------------------------------+-------------------------------------------+
|42                                          |686092                                     |
+--------------------------------------------+-------------------------------------------+
|90                                          |1250744                                    |
+--------------------------------------------+-------------------------------------------+
|78                                          |1237070                                    |
+--------------------------------------------+-------------------------------------------+
|69                                          |1244319                                    |
+--------------------------------------------+-------------------------------------------+
|56                                          |1157871                                    |
+--------------------------------------------+-------------------------------------------+
|39                                          |475933                                     |
+--------------------------------------------+-------------------------------------------+
|35                                          |212428                                     |
+--------------------------------------------+-------------------------------------------+
|96                                          |6301250                                    |
+--------------------------------------------+-------------------------------------------+
|84                                          |1109631                                    |
+--------------------------------------------+-------------------------------------------+
|40                                          |531108                                     |
+--------------------------------------------+-------------------------------------------+
|54                                          |1110081                                    |
+--------------------------------------------+-------------------------------------------+
|58                                          |1151431                                    |
+--------------------------------------------+-------------------------------------------+
|73                                          |1178859                                    |
+--------------------------------------------+-------------------------------------------+
|46                                          |930350                                     |
+--------------------------------------------+-------------------------------------------+
|91                                          |1230022                                    |
+--------------------------------------------+-------------------------------------------+
|55                                          |1148648                                    |
+--------------------------------------------+-------------------------------------------+
|63                                          |1172327                                    |
+--------------------------------------------+-------------------------------------------+
|47                                          |986450                                     |
+--------------------------------------------+-------------------------------------------+
|45                                          |881642                                     |
+--------------------------------------------+-------------------------------------------+
|43                                          |756671                                     |
+--------------------------------------------+-------------------------------------------+
|36                                          |281025                                     |
+--------------------------------------------+-------------------------------------------+
|83                                          |1097380                                    |
+--------------------------------------------+-------------------------------------------+
|29                                          |73055                                      |
+--------------------------------------------+-------------------------------------------+
|24                                          |41421                                      |
+--------------------------------------------+-------------------------------------------+
|61                                          |1138525                                    |
+--------------------------------------------+-------------------------------------------+
|64                                          |1203334                                    |
+--------------------------------------------+-------------------------------------------+
|32                                          |95788                                      |
+--------------------------------------------+-------------------------------------------+
|94                                          |1592798                                    |
+--------------------------------------------+-------------------------------------------+
|75                                          |1251257                                    |
+--------------------------------------------+-------------------------------------------+
|38                                          |417104                                     |
+--------------------------------------------+-------------------------------------------+
|26                                          |55321                                      |
+--------------------------------------------+-------------------------------------------+
|93                                          |1333030                                    |
+--------------------------------------------+-------------------------------------------+
|88                                          |1159907                                    |
+--------------------------------------------+-------------------------------------------+
|57                                          |1180449                                    |
+--------------------------------------------+-------------------------------------------+
|81                                          |1175557                                    |
+--------------------------------------------+-------------------------------------------+
|68                                          |1223148                                    |
+--------------------------------------------+-------------------------------------------+
|72                                          |1211611                                    |
+--------------------------------------------+-------------------------------------------+
|85                                          |1129760                                    |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
^^^^^^^^^^^^^^^^^^^^^

.. image:: 51_Hf13.Bisulfite-Seq.DNA_methylation.EGAX00001612155.51_isize.png

Sample K008974_K008975_K008976_K008977_K008978_K008979_K008980_K008981_7_lane_gembs Lane 51_Hf13.Bisulfite-Seq.DNA_methylation.EGAX00001612411.51
-------------------------------------------------------------------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |248332270                                   |100.00 %                                    |124166135                                   |100.00 %                                    |124166135                                   |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |245797909                                   |98.98 %                                     |123395968                                   |99.38 %                                     |122401941                                   |98.58 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |3                                           |0.00 %                                      |2                                           |0.00 %                                      |1                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |2534358                                     |1.02 %                                      |770165                                      |0.62 %                                      |1764193                                     |1.42 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |129126723                                   |52.00 %                                     |64816100                                    |52.20 %                                     |64310623                                    |51.79 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |116671189                                   |46.98 %                                     |58579870                                    |47.18 %                                     |58091319                                    |46.79 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |83927313                                   |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |67.59 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |4835988051                                  |38.30 %                                     |1777812729                                  |29.11 %                                     |3058175322                                  |46.90 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |1460275925                                  |11.56 %                                     |57630330                                    |0.94 %                                      |1402645595                                  |21.51 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |1382895804                                  |10.95 %                                     |1332078761                                  |21.81 %                                     |50817043                                    |0.78 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |4700333799                                  |37.22 %                                     |2815328747                                  |46.10 %                                     |1885005052                                  |28.91 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |248652484                                   |1.97 %                                      |124216090                                   |2.03 %                                      |124436394                                   |1.91 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |NA                                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Correct Pairs
^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |113804781                                  |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: 51_Hf13.Bisulfite-Seq.DNA_methylation.EGAX00001612411.51_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|33                                          |553004                                     |
+--------------------------------------------+-------------------------------------------+
|50                                          |8136305                                    |
+--------------------------------------------+-------------------------------------------+
|38                                          |512305                                     |
+--------------------------------------------+-------------------------------------------+
|39                                          |643074                                     |
+--------------------------------------------+-------------------------------------------+
|35                                          |456140                                     |
+--------------------------------------------+-------------------------------------------+
|51                                          |33686514                                   |
+--------------------------------------------+-------------------------------------------+
|23                                          |438205                                     |
+--------------------------------------------+-------------------------------------------+
|20                                          |407514                                     |
+--------------------------------------------+-------------------------------------------+
|52                                          |41622496                                   |
+--------------------------------------------+-------------------------------------------+
|27                                          |415261                                     |
+--------------------------------------------+-------------------------------------------+
|42                                          |2032106                                    |
+--------------------------------------------+-------------------------------------------+
|25                                          |419307                                     |
+--------------------------------------------+-------------------------------------------+
|30                                          |425058                                     |
+--------------------------------------------+-------------------------------------------+
|34                                          |524786                                     |
+--------------------------------------------+-------------------------------------------+
|47                                          |2335648                                    |
+--------------------------------------------+-------------------------------------------+
|45                                          |4892428                                    |
+--------------------------------------------+-------------------------------------------+
|43                                          |3702037                                    |
+--------------------------------------------+-------------------------------------------+
|36                                          |367159                                     |
+--------------------------------------------+-------------------------------------------+
|31                                          |481737                                     |
+--------------------------------------------+-------------------------------------------+
|29                                          |423597                                     |
+--------------------------------------------+-------------------------------------------+
|24                                          |426447                                     |
+--------------------------------------------+-------------------------------------------+
|41                                          |1179412                                    |
+--------------------------------------------+-------------------------------------------+
|44                                          |9224340                                    |
+--------------------------------------------+-------------------------------------------+
|37                                          |368232                                     |
+--------------------------------------------+-------------------------------------------+
|32                                          |443603                                     |
+--------------------------------------------+-------------------------------------------+
|49                                          |3968056                                    |
+--------------------------------------------+-------------------------------------------+
|21                                          |440350                                     |
+--------------------------------------------+-------------------------------------------+
|26                                          |447824                                     |
+--------------------------------------------+-------------------------------------------+
|48                                          |2607489                                    |
+--------------------------------------------+-------------------------------------------+
|22                                          |392931                                     |
+--------------------------------------------+-------------------------------------------+
|40                                          |885620                                     |
+--------------------------------------------+-------------------------------------------+
|46                                          |893389                                     |
+--------------------------------------------+-------------------------------------------+
|28                                          |413761                                     |
+--------------------------------------------+-------------------------------------------+
|33                                          |96515                                      |
+--------------------------------------------+-------------------------------------------+
|50                                          |8449227                                    |
+--------------------------------------------+-------------------------------------------+
|38                                          |357225                                     |
+--------------------------------------------+-------------------------------------------+
|39                                          |411836                                     |
+--------------------------------------------+-------------------------------------------+
|35                                          |187790                                     |
+--------------------------------------------+-------------------------------------------+
|51                                          |8000575                                    |
+--------------------------------------------+-------------------------------------------+
|23                                          |26892                                      |
+--------------------------------------------+-------------------------------------------+
|53                                          |71539376                                   |
+--------------------------------------------+-------------------------------------------+
|20                                          |23674                                      |
+--------------------------------------------+-------------------------------------------+
|52                                          |22747296                                   |
+--------------------------------------------+-------------------------------------------+
|27                                          |51096                                      |
+--------------------------------------------+-------------------------------------------+
|42                                          |624486                                     |
+--------------------------------------------+-------------------------------------------+
|25                                          |36700                                      |
+--------------------------------------------+-------------------------------------------+
|30                                          |67081                                      |
+--------------------------------------------+-------------------------------------------+
|34                                          |139332                                     |
+--------------------------------------------+-------------------------------------------+
|47                                          |1147132                                    |
+--------------------------------------------+-------------------------------------------+
|45                                          |919681                                     |
+--------------------------------------------+-------------------------------------------+
|43                                          |741888                                     |
+--------------------------------------------+-------------------------------------------+
|36                                          |245487                                     |
+--------------------------------------------+-------------------------------------------+
|31                                          |71037                                      |
+--------------------------------------------+-------------------------------------------+
|29                                          |63099                                      |
+--------------------------------------------+-------------------------------------------+
|24                                          |32268                                      |
+--------------------------------------------+-------------------------------------------+
|41                                          |528329                                     |
+--------------------------------------------+-------------------------------------------+
|44                                          |909531                                     |
+--------------------------------------------+-------------------------------------------+
|37                                          |303800                                     |
+--------------------------------------------+-------------------------------------------+
|32                                          |81811                                      |
+--------------------------------------------+-------------------------------------------+
|49                                          |3382545                                    |
+--------------------------------------------+-------------------------------------------+
|21                                          |23576                                      |
+--------------------------------------------+-------------------------------------------+
|26                                          |44729                                      |
+--------------------------------------------+-------------------------------------------+
|48                                          |1458062                                    |
+--------------------------------------------+-------------------------------------------+
|22                                          |25342                                      |
+--------------------------------------------+-------------------------------------------+
|40                                          |462799                                     |
+--------------------------------------------+-------------------------------------------+
|46                                          |906940                                     |
+--------------------------------------------+-------------------------------------------+
|28                                          |58978                                      |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
^^^^^^^^^^^^^^^^^^^^^

.. image:: 51_Hf13.Bisulfite-Seq.DNA_methylation.EGAX00001612411.51_isize.png

Sample K008974_K008975_K008976_K008977_K008978_K008979_K008980_K008981_7_lane_gembs Lane 51_Hf13.Bisulfite-Seq.DNA_methylation.EGAX00001612139.51
-------------------------------------------------------------------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |43572421                                    |100.00 %                                    |43572421                                    |100.00 %                                    |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |42913301                                    |98.49 %                                     |42913301                                    |98.49 %                                     |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |2                                           |0.00 %                                      |2                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |659118                                      |1.51 %                                      |659118                                      |1.51 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |21778496                                    |49.98 %                                     |21778496                                    |49.98 %                                     |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |21134807                                    |48.51 %                                     |21134807                                    |48.51 %                                     |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |34620458                                   |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |80.68 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |974932457                                   |29.45 %                                    |
+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |30037247                                    |0.91 %                                     |
+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |725049711                                   |21.90 %                                    |
+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |1536959550                                  |46.42 %                                    |
+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |43708826                                    |1.32 %                                     |
+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |NA                                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: 51_Hf13.Bisulfite-Seq.DNA_methylation.EGAX00001612139.51_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|82                                          |628880                                     |
+--------------------------------------------+-------------------------------------------+
|33                                          |144370                                     |
+--------------------------------------------+-------------------------------------------+
|80                                          |399770                                     |
+--------------------------------------------+-------------------------------------------+
|66                                          |448222                                     |
+--------------------------------------------+-------------------------------------------+
|23                                          |112472                                     |
+--------------------------------------------+-------------------------------------------+
|53                                          |400958                                     |
+--------------------------------------------+-------------------------------------------+
|65                                          |448562                                     |
+--------------------------------------------+-------------------------------------------+
|20                                          |104456                                     |
+--------------------------------------------+-------------------------------------------+
|27                                          |108401                                     |
+--------------------------------------------+-------------------------------------------+
|25                                          |108742                                     |
+--------------------------------------------+-------------------------------------------+
|76                                          |383900                                     |
+--------------------------------------------+-------------------------------------------+
|34                                          |144502                                     |
+--------------------------------------------+-------------------------------------------+
|30                                          |113505                                     |
+--------------------------------------------+-------------------------------------------+
|49                                          |387000                                     |
+--------------------------------------------+-------------------------------------------+
|59                                          |425240                                     |
+--------------------------------------------+-------------------------------------------+
|86                                          |199985                                     |
+--------------------------------------------+-------------------------------------------+
|51                                          |384786                                     |
+--------------------------------------------+-------------------------------------------+
|79                                          |366576                                     |
+--------------------------------------------+-------------------------------------------+
|50                                          |380836                                     |
+--------------------------------------------+-------------------------------------------+
|89                                          |951322                                     |
+--------------------------------------------+-------------------------------------------+
|71                                          |438214                                     |
+--------------------------------------------+-------------------------------------------+
|41                                          |267953                                     |
+--------------------------------------------+-------------------------------------------+
|62                                          |446782                                     |
+--------------------------------------------+-------------------------------------------+
|67                                          |459011                                     |
+--------------------------------------------+-------------------------------------------+
|44                                          |338521                                     |
+--------------------------------------------+-------------------------------------------+
|37                                          |190783                                     |
+--------------------------------------------+-------------------------------------------+
|92                                          |7830906                                    |
+--------------------------------------------+-------------------------------------------+
|60                                          |429903                                     |
+--------------------------------------------+-------------------------------------------+
|31                                          |127507                                     |
+--------------------------------------------+-------------------------------------------+
|48                                          |373505                                     |
+--------------------------------------------+-------------------------------------------+
|21                                          |112478                                     |
+--------------------------------------------+-------------------------------------------+
|22                                          |101111                                     |
+--------------------------------------------+-------------------------------------------+
|52                                          |399574                                     |
+--------------------------------------------+-------------------------------------------+
|77                                          |324654                                     |
+--------------------------------------------+-------------------------------------------+
|87                                          |625870                                     |
+--------------------------------------------+-------------------------------------------+
|28                                          |109477                                     |
+--------------------------------------------+-------------------------------------------+
|70                                          |442866                                     |
+--------------------------------------------+-------------------------------------------+
|74                                          |448113                                     |
+--------------------------------------------+-------------------------------------------+
|42                                          |291438                                     |
+--------------------------------------------+-------------------------------------------+
|90                                          |1866887                                    |
+--------------------------------------------+-------------------------------------------+
|78                                          |336262                                     |
+--------------------------------------------+-------------------------------------------+
|69                                          |451056                                     |
+--------------------------------------------+-------------------------------------------+
|56                                          |431069                                     |
+--------------------------------------------+-------------------------------------------+
|39                                          |234252                                     |
+--------------------------------------------+-------------------------------------------+
|35                                          |152601                                     |
+--------------------------------------------+-------------------------------------------+
|84                                          |2206025                                    |
+--------------------------------------------+-------------------------------------------+
|40                                          |245094                                     |
+--------------------------------------------+-------------------------------------------+
|54                                          |415143                                     |
+--------------------------------------------+-------------------------------------------+
|58                                          |428730                                     |
+--------------------------------------------+-------------------------------------------+
|73                                          |443479                                     |
+--------------------------------------------+-------------------------------------------+
|46                                          |367774                                     |
+--------------------------------------------+-------------------------------------------+
|91                                          |6949884                                    |
+--------------------------------------------+-------------------------------------------+
|55                                          |426280                                     |
+--------------------------------------------+-------------------------------------------+
|63                                          |435248                                     |
+--------------------------------------------+-------------------------------------------+
|47                                          |382226                                     |
+--------------------------------------------+-------------------------------------------+
|45                                          |349467                                     |
+--------------------------------------------+-------------------------------------------+
|43                                          |315153                                     |
+--------------------------------------------+-------------------------------------------+
|36                                          |174236                                     |
+--------------------------------------------+-------------------------------------------+
|83                                          |948923                                     |
+--------------------------------------------+-------------------------------------------+
|29                                          |112473                                     |
+--------------------------------------------+-------------------------------------------+
|24                                          |111098                                     |
+--------------------------------------------+-------------------------------------------+
|61                                          |427884                                     |
+--------------------------------------------+-------------------------------------------+
|64                                          |444682                                     |
+--------------------------------------------+-------------------------------------------+
|32                                          |117703                                     |
+--------------------------------------------+-------------------------------------------+
|75                                          |431977                                     |
+--------------------------------------------+-------------------------------------------+
|38                                          |214539                                     |
+--------------------------------------------+-------------------------------------------+
|26                                          |115543                                     |
+--------------------------------------------+-------------------------------------------+
|88                                          |601447                                     |
+--------------------------------------------+-------------------------------------------+
|57                                          |437887                                     |
+--------------------------------------------+-------------------------------------------+
|81                                          |448429                                     |
+--------------------------------------------+-------------------------------------------+
|68                                          |443784                                     |
+--------------------------------------------+-------------------------------------------+
|72                                          |442193                                     |
+--------------------------------------------+-------------------------------------------+
|85                                          |1261842                                    |
+--------------------------------------------+-------------------------------------------+

Sample K008974_K008975_K008976_K008977_K008978_K008979_K008980_K008981_7_lane_gembs Lane 51_Hf13.Bisulfite-Seq.DNA_methylation.EGAX00001612462.51
-------------------------------------------------------------------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |40554142                                    |100.00 %                                    |20277071                                    |100.00 %                                    |20277071                                    |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |36704246                                    |90.51 %                                     |18954764                                    |93.48 %                                     |17749482                                    |87.53 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |140537                                      |0.35 %                                      |72812                                       |0.36 %                                      |67725                                       |0.33 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |3709359                                     |9.15 %                                      |1249495                                     |6.16 %                                      |2459864                                     |12.13 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |18921986                                    |46.66 %                                     |9758506                                     |48.13 %                                     |9163480                                     |45.19 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |17922797                                    |44.19 %                                     |9269070                                     |45.71 %                                     |8653727                                     |42.68 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |11722619                                   |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |57.81 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |1450279441                                  |35.06 %                                     |591768243                                   |28.61 %                                     |858511198                                   |41.51 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |582617482                                   |14.08 %                                     |105950016                                   |5.12 %                                      |476667466                                   |23.05 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |599146560                                   |14.48 %                                     |485416812                                   |23.47 %                                     |113729748                                   |5.50 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |1406108831                                  |33.99 %                                     |860912531                                   |41.62 %                                     |545196300                                   |26.36 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |98370170                                    |2.38 %                                      |24213640                                    |1.17 %                                      |74156530                                    |3.59 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |0.9458956698868797                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Correct Pairs
^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |14131928                                   |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: 51_Hf13.Bisulfite-Seq.DNA_methylation.EGAX00001612462.51_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|101                                         |20277071                                   |
+--------------------------------------------+-------------------------------------------+
|101                                         |20277071                                   |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
^^^^^^^^^^^^^^^^^^^^^

.. image:: 51_Hf13.Bisulfite-Seq.DNA_methylation.EGAX00001612462.51_isize.png

Sample K008974_K008975_K008976_K008977_K008978_K008979_K008980_K008981_7_lane_gembs Lane 51_Hf13.Bisulfite-Seq.DNA_methylation.EGAX00001612465.51
-------------------------------------------------------------------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |252106594                                   |100.00 %                                    |126053297                                   |100.00 %                                    |126053297                                   |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |234557183                                   |93.04 %                                     |118249845                                   |93.81 %                                     |116307338                                   |92.27 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |1015055                                     |0.40 %                                      |514761                                      |0.41 %                                      |500294                                      |0.40 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |16534356                                    |6.56 %                                      |7288691                                     |5.78 %                                      |9245665                                     |7.33 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |121056439                                   |48.02 %                                     |61008910                                    |48.40 %                                     |60047529                                    |47.64 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |114515799                                   |45.42 %                                     |57755696                                    |45.82 %                                     |56760103                                    |45.03 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |76221142                                   |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |60.47 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |8995296726                                  |34.98 %                                     |3635924573                                  |28.28 %                                     |5359372153                                  |41.68 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |3857628292                                  |15.00 %                                     |772277020                                   |6.01 %                                      |3085351272                                  |24.00 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |4052086370                                  |15.76 %                                     |3193829039                                  |24.84 %                                     |858257331                                   |6.68 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |8542234377                                  |33.22 %                                     |5129082591                                  |39.89 %                                     |3413151786                                  |26.55 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |267626823                                   |1.04 %                                      |126323071                                   |0.98 %                                      |141303752                                   |1.10 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |0.9434122092601323                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Correct Pairs
^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |91286652                                   |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: 51_Hf13.Bisulfite-Seq.DNA_methylation.EGAX00001612465.51_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|101                                         |126053297                                  |
+--------------------------------------------+-------------------------------------------+
|101                                         |126053297                                  |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
^^^^^^^^^^^^^^^^^^^^^

.. image:: 51_Hf13.Bisulfite-Seq.DNA_methylation.EGAX00001612465.51_isize.png

