/EXTERNAL DEEP/methylation/K008974_K008975_K008976_K008977_K008978_K008979_K008980_K008981_7_lane_gembs
BACK
SAMPLE K008974_K008975_K008976_K008977_K008978_K008979_K008980_K008981_7_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
25325051 |
11772511 |
46.49 % |
| NonRefCpG |
257425 |
35398 |
13.75 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
8568232 |
17.48 % |
3757197 |
12.17 % |
155663 |
34.24 % |
23711 |
16.87 % |
| Intermediate (0.3-0.7) |
15388298 |
31.40 % |
8349152 |
27.05 % |
150222 |
33.04 % |
43258 |
30.78 % |
| Methylated (0.7-1) |
25047829 |
51.11 % |
18760467 |
60.78 % |
148739 |
32.72 % |
73549 |
52.34 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.700 |
|
0.770 |
|
0.500 |
|
0.710 |
|