/EXTERNAL DEEP/K008982_K008983_K008984_K008985_K008986_4_lane_gembs/51_Hf10.Bisulfite-Seq.DNA_methylation.EGAX00001612140.51
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 48886729 | 100.00 % | 48886729 | 100.00 % | 0 | 0.00 % |
| General Reads | 47656962 | 97.48 % | 47656962 | 97.48 % | 0 | 0.00 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 4 | 0.00 % | 4 | 0.00 % | 0 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 1229763 | 2.52 % | 1229763 | 2.52 % | 0 | 0.00 % |
| Bisulfite_reads C2T | 24193857 | 49.49 % | 24193857 | 49.49 % | 0 | 0.00 % |
| Bisulfite_reads G2A | 23463109 | 47.99 % | 23463109 | 47.99 % | 0 | 0.00 % |
| Concept | Value |
|---|---|
| Unique Fragments | 37009562 |
| Average Unique | 77.66 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 1004332310 | 29.05 % | ||||
| Base Counts Overall C | 35318834 | 1.02 % | ||||
| Base Counts Overall G | 746257776 | 21.58 % | ||||
| Base Counts Overall T | 1621435123 | 46.89 % | ||||
| Base Counts Overall N | 50394061 | 1.46 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | NA |
| Over Conversion Rate | NA |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 61 | 648415 |
| 28 | 120418 |
| 90 | 1491399 |
| 57 | 700244 |
| 42 | 533296 |
| 78 | 447264 |
| 25 | 112174 |
| 40 | 431452 |
| 89 | 845566 |
| 81 | 517941 |
| 49 | 652203 |
| 86 | 158696 |
| 46 | 656137 |
| 80 | 487780 |
| 91 | 5343661 |
| 23 | 104049 |
| 75 | 584183 |
| 31 | 140803 |
| 85 | 1227592 |
| 38 | 372415 |
| 69 | 632026 |
| 76 | 527794 |
| 62 | 671305 |
| 37 | 333576 |
| 55 | 703021 |
| 59 | 658026 |
| 65 | 663480 |
| 92 | 5786806 |
| 64 | 665695 |
| 58 | 673794 |
| 39 | 405263 |
| 35 | 240622 |
| 87 | 614041 |
| 52 | 676504 |
| 29 | 125039 |
| 36 | 287292 |
| 33 | 163998 |
| 63 | 657553 |
| 26 | 121898 |
| 68 | 633678 |
| 34 | 199916 |
| 84 | 2078338 |
| 24 | 107927 |
| 45 | 627910 |
| 70 | 614695 |
| 43 | 570564 |
| 51 | 648460 |
| 77 | 450179 |
| 66 | 657668 |
| 74 | 609381 |
| 60 | 661490 |
| 22 | 97037 |
| 72 | 603979 |
| 20 | 98308 |
| 73 | 602944 |
| 32 | 141785 |
| 50 | 648282 |
| 47 | 671076 |
| 44 | 607689 |
| 53 | 672441 |
| 67 | 661952 |
| 79 | 470027 |
| 88 | 514801 |
| 27 | 118028 |
| 71 | 598168 |
| 82 | 670188 |
| 83 | 914477 |
| 48 | 652888 |
| 56 | 698705 |
| 54 | 691768 |
| 41 | 473594 |
| 21 | 106333 |
| 30 | 128632 |