/EXTERNAL DEEP/K008982_K008983_K008984_K008985_K008986_4_lane_gembs/51_Hf10.Bisulfite-Seq.DNA_methylation.EGAX00001612257.51

BACK

SAMPLE K008982_K008983_K008984_K008985_K008986_4_lane_gembs LANE 51_Hf10.Bisulfite-Seq.DNA_methylation.EGAX00001612257.51

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 403901362 100.00 % 201950681 100.00 % 201950681 100.00 %
General Reads 389261368 96.38 % 195185597 96.65 % 194075771 96.10 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1051 0.00 % 541 0.00 % 510 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 14638943 3.62 % 6764543 3.35 % 7874400 3.90 %
Bisulfite_reads C2T 202293992 50.08 % 101426721 50.22 % 100867271 49.95 %
Bisulfite_reads G2A 186968427 46.29 % 93759417 46.43 % 93209010 46.15 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 61192776
Average Unique 30.30 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 11667185539 38.31 % 4307171482 29.09 % 7360014057 47.03 %
Base Counts Overall C 3558727654 11.68 % 234786175 1.59 % 3323941479 21.24 %
Base Counts Overall G 3394083477 11.14 % 3193536011 21.57 % 200547466 1.28 %
Base Counts Overall T 11413799117 37.47 % 6869530202 46.39 % 4544268915 29.04 %
Base Counts Overall N 424576357 1.39 % 203401523 1.37 % 221174834 1.41 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.056449157391640845
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 90199662



Mapping Quality

Mapping Quality Histogram
51_Hf10.Bisulfite-Seq.DNA_methylation.EGAX00001612257.51.mapq.png



Read Length

Read Length Reads
96 5493933
61 2594580
28 446721
90 7184412
57 2809672
42 2123763
78 2326359
25 412132
40 1704554
89 3297933
81 2079209
49 2618665
86 1828591
46 2628987
80 2248491
91 4254992
23 387023
94 1893280
75 2438111
31 521004
85 1730845
38 1461863
69 2561047
76 2395007
62 2692907
37 1308246
55 2823951
59 2657945
97 19299691
65 2662089
92 603857
64 2663297
58 2717033
39 1598943
35 924449
87 2005104
52 2715249
29 461104
36 1119990
33 612619
63 2631112
26 453422
68 2567374
34 757200
84 1608736
24 394810
45 2527416
70 2490028
43 2282565
51 2606300
77 2426544
66 2635005
74 2405611
60 2650829
22 359655
72 2430301
20 366301
73 2367406
32 528306
50 2604016
47 2693540
44 2430566
93 2187846
53 2697291
67 2673914
79 2353690
95 3130747
88 2445951
27 439667
98 22655199
71 2412033
82 1918772
83 1540363
48 2630502
56 2808441
54 2776852
41 1884194
21 393206
30 477322
96 6419064
99 42768719
61 2393019
28 210183
90 1786464
57 2567753
42 1886135
78 2090256
25 151726
40 1485597
89 1751053
81 1902239
49 2363370
86 1769184
46 2388443
80 1963952
91 1727886
23 109295
94 2094127
75 2197847
31 258761
85 1783627
38 1247118
69 2315386
76 2150874
62 2442221
37 1090646
55 2586728
59 2415568
97 6511302
65 2424671
92 1694209
64 2421865
58 2479094
39 1401114
35 705372
87 1801996
52 2472049
29 221410
36 915948
33 354865
63 2385778
26 175711
68 2322290
34 521564
84 1767734
24 130505
45 2303627
70 2244018
43 2048665
51 2361222
77 2184912
66 2389086
74 2164556
60 2435171
22 103221
72 2182090
20 95980
73 2117438
32 295736
50 2348703
47 2458823
44 2190436
93 1868332
53 2459184
67 2433207
79 2059720
95 3378731
88 1750223
27 192174
98 15566777
71 2150432
82 1888760
83 1757838
48 2397011
56 2569316
54 2539421
41 1652516
21 96278
30 242359



Insert Size Plot

Insert Size Histogram
51_Hf10.Bisulfite-Seq.DNA_methylation.EGAX00001612257.51.isize.png