/EXTERNAL DEEP/K008982_K008983_K008984_K008985_K008986_4_lane_gembs/51_Hf10.Bisulfite-Seq.DNA_methylation.EGAX00001612258.51
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 366880458 | 100.00 % | 183440229 | 100.00 % | 183440229 | 100.00 % |
| General Reads | 359997337 | 98.12 % | 181583829 | 98.99 % | 178413508 | 97.26 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 11 | 0.00 % | 4 | 0.00 % | 7 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 6883110 | 1.88 % | 1856396 | 1.01 % | 5026714 | 2.74 % |
| Bisulfite_reads C2T | 191049685 | 52.07 % | 96326118 | 52.51 % | 94723567 | 51.64 % |
| Bisulfite_reads G2A | 168947663 | 46.05 % | 85257715 | 46.48 % | 83689948 | 45.62 % |
| Concept | Value |
|---|---|
| Unique Fragments | 110981590 |
| Average Unique | 60.50 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 7042719226 | 38.27 % | 2583776711 | 28.97 % | 4458942515 | 47.03 % |
| Base Counts Overall C | 2122674555 | 11.54 % | 95967295 | 1.08 % | 2026707260 | 21.38 % |
| Base Counts Overall G | 2013159773 | 10.94 % | 1931790068 | 21.66 % | 81369705 | 0.86 % |
| Base Counts Overall T | 6856185427 | 37.26 % | 4125326840 | 46.25 % | 2730858587 | 28.80 % |
| Base Counts Overall N | 367224240 | 2.00 % | 183475347 | 2.06 % | 183748893 | 1.94 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | NA |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 153146538 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 33 | 903704 |
| 26 | 699778 |
| 34 | 1012180 |
| 28 | 667299 |
| 37 | 1065699 |
| 45 | 8454336 |
| 24 | 638742 |
| 43 | 6121434 |
| 42 | 3748360 |
| 32 | 753203 |
| 49 | 6390463 |
| 25 | 648591 |
| 40 | 1952193 |
| 22 | 586663 |
| 20 | 599603 |
| 46 | 1242037 |
| 41 | 2416192 |
| 47 | 4181139 |
| 51 | 46614494 |
| 44 | 14853759 |
| 31 | 766863 |
| 38 | 1321281 |
| 27 | 664487 |
| 52 | 55105132 |
| 29 | 689373 |
| 50 | 11776699 |
| 30 | 698329 |
| 48 | 3976529 |
| 39 | 1575929 |
| 35 | 1022833 |
| 21 | 646898 |
| 23 | 636191 |
| 36 | 1009816 |
| 33 | 326538 |
| 53 | 95077190 |
| 26 | 150504 |
| 34 | 491212 |
| 28 | 183235 |
| 37 | 1013444 |
| 45 | 2374800 |
| 24 | 106414 |
| 43 | 2051680 |
| 42 | 1820131 |
| 32 | 269912 |
| 49 | 5685516 |
| 25 | 127219 |
| 40 | 1401287 |
| 22 | 79826 |
| 20 | 74054 |
| 46 | 2381713 |
| 41 | 1569109 |
| 47 | 2729058 |
| 51 | 11788306 |
| 44 | 2333669 |
| 31 | 227778 |
| 38 | 1151001 |
| 27 | 165553 |
| 52 | 31030459 |
| 29 | 196181 |
| 50 | 12345399 |
| 30 | 213832 |
| 48 | 3116796 |
| 39 | 1278088 |
| 35 | 665986 |
| 21 | 74739 |
| 23 | 87168 |
| 36 | 852432 |
| Insert Size Histogram |
|---|
 |