/EXTERNAL DEEP/K008982_K008983_K008984_K008985_K008986_4_lane_gembs/51_Hf10.Bisulfite-Seq.DNA_methylation.EGAX00001612307.51

BACK

SAMPLE K008982_K008983_K008984_K008985_K008986_4_lane_gembs LANE 51_Hf10.Bisulfite-Seq.DNA_methylation.EGAX00001612307.51

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 161075138 100.00 % 80537569 100.00 % 80537569 100.00 %
General Reads 155827854 96.74 % 78074639 96.94 % 77753215 96.54 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 336 0.00 % 172 0.00 % 164 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 5246948 3.26 % 2462758 3.06 % 2784190 3.46 %
Bisulfite_reads C2T 80980227 50.27 % 40572942 50.38 % 40407285 50.17 %
Bisulfite_reads G2A 74847963 46.47 % 37501869 46.56 % 37346094 46.37 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 24273988
Average Unique 30.14 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 4646732981 38.35 % 1730066932 29.35 % 2916666049 46.89 %
Base Counts Overall C 1403525513 11.58 % 88866410 1.51 % 1314659103 21.13 %
Base Counts Overall G 1339250587 11.05 % 1267648124 21.50 % 71602463 1.15 %
Base Counts Overall T 4553161943 37.58 % 2726669412 46.25 % 1826492531 29.36 %
Base Counts Overall N 173070153 1.43 % 81667883 1.39 % 91402270 1.47 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.07022508957668391
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 35803137



Mapping Quality

Mapping Quality Histogram
51_Hf10.Bisulfite-Seq.DNA_methylation.EGAX00001612307.51.mapq.png



Read Length

Read Length Reads
96 2110293
99 1
61 1044688
28 176035
90 2817862
57 1131318
42 851083
78 935742
25 162156
40 684001
89 1294993
81 836538
49 1049731
86 725523
46 1051456
80 904736
91 1690398
23 152926
94 736356
75 980805
31 206421
85 691983
38 584657
69 1032507
76 965292
62 1081432
37 522915
55 1136694
59 1069594
97 7584774
65 1073230
92 238464
64 1071461
58 1095367
39 638652
35 369668
87 794235
52 1091056
29 181359
36 447740
33 244208
63 1059357
26 179142
68 1035253
34 303053
84 644480
24 157305
45 1013153
70 1003015
43 918415
51 1049121
77 976840
66 1065166
74 969871
60 1070646
22 141334
72 976542
20 145068
73 954544
32 210569
50 1043598
47 1079746
44 973869
93 858731
53 1085632
67 1078370
79 945368
95 1201418
88 958521
27 173666
98 9042006
71 974250
82 773247
83 618183
48 1054027
56 1130514
54 1118919
41 753914
21 154716
30 187650
96 2488647
99 16804552
61 951178
28 80659
90 720600
57 1036932
42 765979
78 848019
25 58450
40 602180
89 708008
81 772494
49 955972
86 715373
46 967465
80 796565
91 690545
23 41785
94 816061
75 890265
31 98812
85 723881
38 499728
69 942339
76 874192
62 983950
37 439097
55 1045542
59 973387
97 2511378
65 982544
92 668680
64 979450
58 1001181
39 549560
35 277676
87 728193
52 999141
29 86047
36 357760
33 138738
63 965134
26 67746
68 942811
34 206119
84 719343
24 50225
45 953113
70 910075
43 832103
51 955274
77 886156
66 970755
74 877970
60 978702
22 39315
72 885597
20 36979
73 859585
32 116376
50 949163
47 995468
44 892292
93 720492
53 1000723
67 987132
79 834471
95 1325938
88 706971
27 73662
98 6027932
71 876971
82 770987
83 716501
48 969648
56 1037021
54 1026818
41 669058
21 36819
30 93119



Insert Size Plot

Insert Size Histogram
51_Hf10.Bisulfite-Seq.DNA_methylation.EGAX00001612307.51.isize.png