/EXTERNAL DEEP/mapping_coverage/K008982_K008983_K008984_K008985_K008986_4_lane_gembs
BACK
SAMPLE K008982_K008983_K008984_K008985_K008986_4_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
973686378 |
100% |
54225808832 |
100% |
| Mapped |
965114703 |
99.12 % |
53677345721 |
98.99 % |
| Passed |
438991693 |
45.09 % |
21403474211 |
39.47 % |
| NotPassed |
526123010 |
54.03 % |
32273871510 |
59.52 % |
| |
|
|
|
|
| LowMAPQ |
486076489 |
49.92 % |
29634354983 |
54.65 % |
| MateUnmapped |
8571675 |
0.88 % |
483508897 |
0.89 % |
| Duplicate |
20037427 |
2.06 % |
1308975837 |
2.41 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
2788200 |
0.29 % |
198965908 |
0.37 % |
| |
|
|
|
|
| NotCorrectlyAligned |
17220894 |
1.77 % |
1131574782 |
2.09 % |
| Unmapped |
8571675 |
0.88 % |
548463111 |
1.01 % |
Base Level Counts
| Bases |
# |
% |
| Total |
27336587510 |
100% |
| Passed |
19472506293 |
71.23 % |
| Trimmed |
1623877587 |
5.94 % |
| Clipped |
47650082 |
0.17 % |
| Overlapping |
6000737265 |
21.95 % |
| LowQuality |
191816283 |
0.70 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |