/EXTERNAL DEEP/methylation/K008982_K008983_K008984_K008985_K008986_4_lane_gembs
BACK
SAMPLE K008982_K008983_K008984_K008985_K008986_4_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
22970067 |
2933077 |
12.77 % |
| NonRefCpG |
404695 |
9757 |
2.41 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
7017672 |
16.67 % |
683902 |
6.82 % |
270364 |
38.38 % |
7338 |
13.20 % |
| Intermediate (0.3-0.7) |
13760524 |
32.69 % |
2312744 |
23.07 % |
235744 |
33.47 % |
14624 |
26.31 % |
| Methylated (0.7-1) |
21311560 |
50.63 % |
7029568 |
70.11 % |
198320 |
28.15 % |
33614 |
60.48 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.700 |
|
0.820 |
|
0.430 |
|
0.780 |
|