/EXTERNAL DEEP/K008987_K008988_K008989_3_lane_gembs/41_Hm04.Bisulfite-Seq.DNA_methylation.EGAX00001612185.41

BACK

SAMPLE K008987_K008988_K008989_3_lane_gembs LANE 41_Hm04.Bisulfite-Seq.DNA_methylation.EGAX00001612185.41

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 376941474 100.00 % 188470737 100.00 % 188470737 100.00 %
General Reads 351484928 93.25 % 176756310 93.78 % 174728618 92.71 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 204347 0.05 % 102942 0.05 % 101405 0.05 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 25252199 6.70 % 11611485 6.16 % 13640714 7.24 %
Bisulfite_reads C2T 180875490 47.99 % 90957705 48.26 % 89917785 47.71 %
Bisulfite_reads G2A 170813785 45.32 % 85901547 45.58 % 84912238 45.05 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 141102244
Average Unique 74.87 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 14872045043 38.68 % 6713417021 34.92 % 8158628022 42.44 %
Base Counts Overall C 4403889808 11.45 % 397401233 2.07 % 4006488575 20.84 %
Base Counts Overall G 4130208512 10.74 % 3783335059 19.68 % 346873453 1.80 %
Base Counts Overall T 14651368978 38.11 % 8138806361 42.34 % 6512562617 33.88 %
Base Counts Overall N 390518007 1.02 % 191055500 0.99 % 199462507 1.04 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9943761288332403
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 163992631



Mapping Quality

Mapping Quality Histogram
41_Hm04.Bisulfite-Seq.DNA_methylation.EGAX00001612185.41.mapq.png



Read Length

Read Length Reads
101 188470737
101 188470737



Insert Size Plot

Insert Size Histogram
41_Hm04.Bisulfite-Seq.DNA_methylation.EGAX00001612185.41.isize.png