/EXTERNAL DEEP/K008987_K008988_K008989_3_lane_gembs/41_Hm04.Bisulfite-Seq.DNA_methylation.EGAX00001612305.41

BACK

SAMPLE K008987_K008988_K008989_3_lane_gembs LANE 41_Hm04.Bisulfite-Seq.DNA_methylation.EGAX00001612305.41

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 348059266 100.00 % 174029633 100.00 % 174029633 100.00 %
General Reads 334681299 96.16 % 168153035 96.62 % 166528264 95.69 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 217558 0.06 % 109696 0.06 % 107862 0.06 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 13160409 3.78 % 5766902 3.31 % 7393507 4.25 %
Bisulfite_reads C2T 170153522 48.89 % 85460852 49.11 % 84692670 48.67 %
Bisulfite_reads G2A 164745335 47.33 % 82801879 47.58 % 81943456 47.09 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 103692098
Average Unique 59.58 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 12588292945 35.46 % 4916272586 27.70 % 7672020359 43.22 %
Base Counts Overall C 5094515454 14.35 % 660824693 3.72 % 4433690761 24.98 %
Base Counts Overall G 5471956478 15.41 % 4621085556 26.03 % 850870922 4.79 %
Base Counts Overall T 11995311511 33.79 % 7377412966 41.56 % 4617898545 26.01 %
Base Counts Overall N 351968744 0.99 % 175426765 0.99 % 176541979 0.99 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9806394965940277
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 121878346



Mapping Quality

Mapping Quality Histogram
41_Hm04.Bisulfite-Seq.DNA_methylation.EGAX00001612305.41.mapq.png



Read Length

Read Length Reads
101 174029633
101 174029633



Insert Size Plot

Insert Size Histogram
41_Hm04.Bisulfite-Seq.DNA_methylation.EGAX00001612305.41.isize.png