/EXTERNAL DEEP/K008987_K008988_K008989_3_lane_gembs/41_Hm04.Bisulfite-Seq.DNA_methylation.EGAX00001612342.41

BACK

SAMPLE K008987_K008988_K008989_3_lane_gembs LANE 41_Hm04.Bisulfite-Seq.DNA_methylation.EGAX00001612342.41

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 375119772 100.00 % 187559886 100.00 % 187559886 100.00 %
General Reads 349439626 93.15 % 175601004 93.62 % 173838622 92.68 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 204623 0.05 % 103005 0.05 % 101618 0.05 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 25475523 6.79 % 11855877 6.32 % 13619646 7.26 %
Bisulfite_reads C2T 179891776 47.96 % 90394651 48.20 % 89497125 47.72 %
Bisulfite_reads G2A 169752473 45.25 % 85309358 45.48 % 84443115 45.02 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 140426114
Average Unique 74.87 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 14793466303 38.66 % 6675450867 34.89 % 8118015436 42.43 %
Base Counts Overall C 4386316312 11.46 % 396518919 2.07 % 3989797393 20.86 %
Base Counts Overall G 4139429037 10.82 % 3789655808 19.81 % 349773229 1.83 %
Base Counts Overall T 14554625264 38.04 % 8079496556 42.23 % 6475128708 33.85 %
Base Counts Overall N 388379828 1.02 % 189986222 0.99 % 198393606 1.04 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9943358367114419
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 163377278



Mapping Quality

Mapping Quality Histogram
41_Hm04.Bisulfite-Seq.DNA_methylation.EGAX00001612342.41.mapq.png



Read Length

Read Length Reads
101 187559886
101 187559886



Insert Size Plot

Insert Size Histogram
41_Hm04.Bisulfite-Seq.DNA_methylation.EGAX00001612342.41.isize.png