/EXTERNAL DEEP/mapping_coverage/K008987_K008988_K008989_3_lane_gembs
BACK
SAMPLE K008987_K008988_K008989_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
995406251 |
100% |
95288761109 |
100% |
| Mapped |
979520145 |
98.40 % |
93684264403 |
98.32 % |
| Passed |
693928331 |
69.71 % |
64839491189 |
68.05 % |
| NotPassed |
285591814 |
28.69 % |
28844773214 |
30.27 % |
| |
|
|
|
|
| LowMAPQ |
203431082 |
20.44 % |
20546539282 |
21.56 % |
| MateUnmapped |
15886106 |
1.60 % |
1604496706 |
1.68 % |
| Duplicate |
40782775 |
4.10 % |
4119060275 |
4.32 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
30046 |
0.00 % |
3034646 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
41347911 |
4.15 % |
4176139011 |
4.38 % |
| Unmapped |
15886106 |
1.60 % |
1604496706 |
1.68 % |
Base Level Counts
| Bases |
# |
% |
| Total |
70063512039 |
100% |
| Passed |
60457383624 |
86.29 % |
| Trimmed |
3173630003 |
4.53 % |
| Clipped |
240395717 |
0.34 % |
| Overlapping |
4983625133 |
7.11 % |
| LowQuality |
1208477562 |
1.72 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |