/EXTERNAL DEEP/methylation/K008987_K008988_K008989_3_lane_gembs
BACK
SAMPLE K008987_K008988_K008989_3_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26377049 |
16073448 |
60.94 % |
| NonRefCpG |
340190 |
130078 |
38.24 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
7304137 |
14.56 % |
3426944 |
9.19 % |
158077 |
25.56 % |
48573 |
13.44 % |
| Intermediate (0.3-0.7) |
12867344 |
25.65 % |
8170072 |
21.92 % |
173651 |
28.08 % |
92306 |
25.53 % |
| Methylated (0.7-1) |
30002320 |
59.80 % |
25682506 |
68.89 % |
286629 |
46.35 % |
220644 |
61.03 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.780 |
|
0.830 |
|
0.660 |
|
0.790 |
|