{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 128675266, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 126563018, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 98.36, 
            "paired": 128675266, 
            "paired_qc_failed": 0, 
            "read1": 64337633, 
            "read1_qc_failed": 0, 
            "read2": 64337633, 
            "read2_qc_failed": 0, 
            "paired_properly": 125324301, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 97.4, 
            "with_itself": 125647520, 
            "with_itself_qc_failed": 0, 
            "singletons": 915498, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.71, 
            "diff_chroms": 128942, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 116616760, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 115340967, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 98.91, 
            "paired": 116616760, 
            "paired_qc_failed": 0, 
            "read1": 58308380, 
            "read1_qc_failed": 0, 
            "read2": 58308380, 
            "read2_qc_failed": 0, 
            "paired_properly": 112618961, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 96.57, 
            "with_itself": 114670631, 
            "with_itself_qc_failed": 0, 
            "singletons": 670336, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.57, 
            "diff_chroms": 1356484, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 54488917, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 8741531, 
            "paired_opt_dupes": 41164, 
            "dupes_pct": 0.160428
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 46805405, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 2581950, 
            "paired_opt_dupes": 44282, 
            "dupes_pct": 0.055164
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 54487816, 
            "distinct_read_pairs": 45746472, 
            "one_read_pair": 38190365, 
            "two_read_pair": 6517288, 
            "NRF": 0.839573, 
            "PBC1": 0.834826, 
            "PBC2": 5.859855
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 46788318, 
            "distinct_read_pairs": 44207269, 
            "one_read_pair": 41662261, 
            "two_read_pair": 2510205, 
            "NRF": 0.944836, 
            "PBC1": 0.94243, 
            "PBC2": 16.597155
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 91494772, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 91494772, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 91494772, 
            "paired_qc_failed": 0, 
            "read1": 45747386, 
            "read1_qc_failed": 0, 
            "read2": 45747386, 
            "read2_qc_failed": 0, 
            "paired_properly": 91494772, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 91494772, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 88446910, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 88446910, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 88446910, 
            "paired_qc_failed": 0, 
            "read1": 44223455, 
            "read1_qc_failed": 0, 
            "read2": 44223455, 
            "read2_qc_failed": 0, 
            "paired_properly": 88446910, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 88446910, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 42399, 
        "Np": 0, 
        "N_opt": 42399, 
        "N_consv": 42399, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 225, 
            "corr_est_frag_len": 0.428918777283684, 
            "phantom_peak": 55, 
            "corr_phantom_peak": 0.3916934, 
            "argmin_corr": 1500, 
            "min_corr": 0.2030859, 
            "NSC": 2.112007, 
            "RSC": 1.197369
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.695238367234
        }, 
        "rep1-pr1": {
            "FRiP": 0.692026982977
        }, 
        "rep1-pr2": {
            "FRiP": 0.692114377695
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.690803150897
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.0917492004921, 
            "auc": 0.494808704768, 
            "ch_div": 0.146821969515, 
            "elbow_pt": 0.0, 
            "jsd": 0.950108360123, 
            "syn_auc": 0.496854521655, 
            "syn_elbow_pt": 0.617372070577, 
            "syn_jsd": 0.668735466245
        }
    ]
}
