/EXTERNAL DEEP/K008990_K008991_K008992_K008993_K008994_K008995_K008996_K008997_K008998_K008999_K009000_K009001_K009002_K009003_K009004_K009005_16_lane_gembs/41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612206.41
BACK
SAMPLE K008990_K008991_K008992_K008993_K008994_K008995_K008996_K008997_K008998_K008999_K009000_K009001_K009002_K009003_K009004_K009005_16_lane_gembs LANE 41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612206.41
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 87578746 | 100.00 % | 43789373 | 100.00 % | 43789373 | 100.00 % |
| General Reads | 81963441 | 93.59 % | 41236137 | 94.17 % | 40727304 | 93.01 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 2108 | 0.00 % | 1068 | 0.00 % | 1040 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 5613197 | 6.41 % | 2552168 | 5.83 % | 3061029 | 6.99 % |
| Bisulfite_reads C2T | 42006117 | 47.96 % | 21111429 | 48.21 % | 20894688 | 47.72 % |
| Bisulfite_reads G2A | 39959432 | 45.63 % | 20125776 | 45.96 % | 19833656 | 45.29 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 23730167 |
| Average Unique | 54.19 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 3472514556 | 38.87 % | 1452817007 | 32.53 % | 2019697549 | 45.22 % |
| Base Counts Overall C | 986333887 | 11.04 % | 76489398 | 1.71 % | 909844489 | 20.37 % |
| Base Counts Overall G | 953608680 | 10.68 % | 894471440 | 20.03 % | 59137240 | 1.32 % |
| Base Counts Overall T | 3414108704 | 38.22 % | 1995038775 | 44.67 % | 1419069929 | 31.77 % |
| Base Counts Overall N | 106466265 | 1.19 % | 47699426 | 1.07 % | 58766839 | 1.32 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | 0.9339290221503284 |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 28991718 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 101 | 43789373 |
| 101 | 43789373 |
Insert Size Plot
| Insert Size Histogram |
 |