/EXTERNAL DEEP/K008990_K008991_K008992_K008993_K008994_K008995_K008996_K008997_K008998_K008999_K009000_K009001_K009002_K009003_K009004_K009005_16_lane_gembs/41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612299.41
BACK
SAMPLE K008990_K008991_K008992_K008993_K008994_K008995_K008996_K008997_K008998_K008999_K009000_K009001_K009002_K009003_K009004_K009005_16_lane_gembs LANE 41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612299.41
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 110682666 | 100.00 % | 55341333 | 100.00 % | 55341333 | 100.00 % |
| General Reads | 108968187 | 98.45 % | 54800550 | 99.02 % | 54167637 | 97.88 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 188660 | 0.17 % | 95000 | 0.17 % | 93660 | 0.17 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 1525819 | 1.38 % | 445783 | 0.81 % | 1080036 | 1.95 % |
| Bisulfite_reads C2T | 56164964 | 50.74 % | 28236379 | 51.02 % | 27928585 | 50.47 % |
| Bisulfite_reads G2A | 52991883 | 47.88 % | 26659171 | 48.17 % | 26332712 | 47.58 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 42485074 |
| Average Unique | 76.77 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 4332578071 | 38.38 % | 1692467626 | 29.98 % | 2640110445 | 46.77 % |
| Base Counts Overall C | 1270702004 | 11.26 % | 50419058 | 0.89 % | 1220282946 | 21.62 % |
| Base Counts Overall G | 1291402063 | 11.44 % | 1253983788 | 22.21 % | 37418275 | 0.66 % |
| Base Counts Overall T | 4277836328 | 37.89 % | 2592487465 | 45.93 % | 1685348863 | 29.86 % |
| Base Counts Overall N | 117113466 | 1.04 % | 55458029 | 0.98 % | 61655437 | 1.09 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | 0.9946019483143694 |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 50409033 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 101 | 55341333 |
| 101 | 55341333 |
Insert Size Plot
| Insert Size Histogram |
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