/EXTERNAL DEEP/K008990_K008991_K008992_K008993_K008994_K008995_K008996_K008997_K008998_K008999_K009000_K009001_K009002_K009003_K009004_K009005_16_lane_gembs/41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612309.41
BACK
SAMPLE K008990_K008991_K008992_K008993_K008994_K008995_K008996_K008997_K008998_K008999_K009000_K009001_K009002_K009003_K009004_K009005_16_lane_gembs LANE 41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612309.41
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 79136736 | 100.00 % | 39568368 | 100.00 % | 39568368 | 100.00 % |
| General Reads | 73927016 | 93.42 % | 37071558 | 93.69 % | 36855458 | 93.14 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 1668 | 0.00 % | 837 | 0.00 % | 831 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 5208052 | 6.58 % | 2495973 | 6.31 % | 2712079 | 6.85 % |
| Bisulfite_reads C2T | 37951369 | 47.96 % | 19017735 | 48.06 % | 18933634 | 47.85 % |
| Bisulfite_reads G2A | 35977315 | 45.46 % | 18054660 | 45.63 % | 17922655 | 45.30 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 21260971 |
| Average Unique | 53.73 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 3141776466 | 38.92 % | 1323452288 | 32.79 % | 1818324178 | 45.05 % |
| Base Counts Overall C | 889015296 | 11.01 % | 71804924 | 1.78 % | 817210372 | 20.25 % |
| Base Counts Overall G | 879873649 | 10.90 % | 809694807 | 20.06 % | 70178842 | 1.74 % |
| Base Counts Overall T | 3073837080 | 38.08 % | 1791196835 | 44.38 % | 1282640245 | 31.78 % |
| Base Counts Overall N | 87444581 | 1.08 % | 39824682 | 0.99 % | 47619899 | 1.18 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | 0.9939494115270618 |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 26207652 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 101 | 39568368 |
| 101 | 39568368 |
Insert Size Plot
| Insert Size Histogram |
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