/EXTERNAL DEEP/K008990_K008991_K008992_K008993_K008994_K008995_K008996_K008997_K008998_K008999_K009000_K009001_K009002_K009003_K009004_K009005_16_lane_gembs/41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612345.41

BACK

SAMPLE K008990_K008991_K008992_K008993_K008994_K008995_K008996_K008997_K008998_K008999_K009000_K009001_K009002_K009003_K009004_K009005_16_lane_gembs LANE 41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612345.41

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 161298038 100.00 % 80649019 100.00 % 80649019 100.00 %
General Reads 152948863 94.82 % 76532040 94.90 % 76416823 94.75 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 2 0.00 % 1 0.00 % 1 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 8349173 5.18 % 4116978 5.10 % 4232195 5.25 %
Bisulfite_reads C2T 77843649 48.26 % 38949841 48.30 % 38893808 48.23 %
Bisulfite_reads G2A 75105216 46.56 % 37582200 46.60 % 37523016 46.53 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 57841954
Average Unique 71.72 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 5562251466 36.98 % 2047296131 28.43 % 3514955335 44.84 %
Base Counts Overall C 2085732987 13.87 % 231464615 3.21 % 1854268372 23.65 %
Base Counts Overall G 2059214394 13.69 % 1803211219 25.04 % 256003175 3.27 %
Base Counts Overall T 5170387604 34.38 % 3037828341 42.19 % 2132559263 27.20 %
Base Counts Overall N 161913744 1.08 % 80659182 1.12 % 81254562 1.04 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate NA
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 68671883



Mapping Quality

Mapping Quality Histogram
41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612345.41.mapq.png



Read Length

Read Length Reads
40 197853
96 4914896
31 190151
55 204033
52 203723
66 227414
23 190130
74 481798
91 2104269
42 205788
53 198771
84 181930
39 192084
28 193084
38 197935
50 204364
68 278330
72 296173
46 198315
30 188331
83 131469
85 243703
21 195754
27 192954
77 324662
41 200172
37 193207
62 209913
89 1891807
93 1136984
64 219224
95 2236771
29 190157
25 210570
35 189237
71 318227
87 523120
65 231041
47 196374
92 612939
56 207718
94 1476494
60 229706
80 238963
69 285766
54 205006
98 25060050
67 267972
59 238484
61 221930
36 194418
63 212500
58 225063
43 212631
90 4308661
49 202867
33 194265
78 295060
81 198674
86 364243
76 383180
75 431758
48 201694
20 199657
70 285491
22 188787
32 193279
79 263209
24 210596
57 212816
34 189260
82 137601
51 205695
44 210038
73 415638
26 196375
97 19974380
88 1011770
45 199667
40 41067
96 5235700
31 36370
55 40482
52 38298
66 138346
23 20075
74 70016
91 262441
42 36702
99 46174799
53 39247
84 77973
39 36472
28 26435
38 31672
50 38580
68 260586
72 106680
46 48683
30 28913
83 73254
85 84659
21 20425
27 24451
77 63182
41 46523
37 29943
62 79635
89 183266
93 412855
64 107719
95 1922701
29 26865
25 21945
35 35232
71 162855
87 106663
65 114347
47 48188
92 252209
56 42846
94 697296
60 46127
80 66239
69 283642
54 39130
98 15113473
67 195132
59 44135
61 56105
36 29909
63 101678
58 43790
43 36309
90 282089
49 41434
33 37340
78 64653
81 67944
86 91970
76 63709
75 64743
48 46141
20 19116
70 247566
22 21716
32 35915
79 64726
24 19746
57 42660
34 37347
82 69699
51 36371
44 39352
73 81119
26 22662
97 5568084
88 137324
45 43328



Insert Size Plot

Insert Size Histogram
41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612345.41.isize.png