/EXTERNAL DEEP/K008990_K008991_K008992_K008993_K008994_K008995_K008996_K008997_K008998_K008999_K009000_K009001_K009002_K009003_K009004_K009005_16_lane_gembs/41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612434.41

BACK

SAMPLE K008990_K008991_K008992_K008993_K008994_K008995_K008996_K008997_K008998_K008999_K009000_K009001_K009002_K009003_K009004_K009005_16_lane_gembs LANE 41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612434.41

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 160313940 100.00 % 80156970 100.00 % 80156970 100.00 %
General Reads 152084406 94.87 % 76131273 94.98 % 75953133 94.76 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1 0.00 % 0 0.00 % 1 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 8229533 5.13 % 4025697 5.02 % 4203836 5.24 %
Bisulfite_reads C2T 77397721 48.28 % 38742447 48.33 % 38655274 48.22 %
Bisulfite_reads G2A 74686686 46.59 % 37388826 46.64 % 37297860 46.53 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 57495213
Average Unique 71.73 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 5527146221 36.95 % 2034030874 28.39 % 3493115347 44.80 %
Base Counts Overall C 2077281197 13.89 % 229176575 3.20 % 1848104622 23.70 %
Base Counts Overall G 2046771839 13.68 % 1796525838 25.08 % 250246001 3.21 %
Base Counts Overall T 5147266551 34.41 % 3023033884 42.20 % 2124232667 27.25 %
Base Counts Overall N 161906496 1.08 % 81094526 1.13 % 80811970 1.04 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate NA
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 68278711



Mapping Quality

Mapping Quality Histogram
41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612434.41.mapq.png



Read Length

Read Length Reads
40 194073
96 4884395
31 187825
55 200766
52 200312
66 224348
23 187051
74 431275
91 2091335
42 203319
53 197128
84 178169
39 189176
28 189377
38 194502
50 203223
68 274729
72 285545
46 194992
30 184456
83 128517
85 237322
21 193980
27 188428
77 342227
41 197981
37 190566
62 207361
89 1864477
93 1124906
64 216348
95 2210482
29 186746
25 206769
35 186632
71 313138
87 513876
65 226536
47 194010
92 604833
56 204520
94 1463862
60 226266
80 236533
69 279194
54 204065
98 25170556
67 256486
59 234596
61 218327
36 192036
63 208899
58 221604
43 210987
90 4284513
49 199946
33 189923
78 287669
81 198303
86 358281
76 383467
75 427955
48 199277
20 196220
70 278446
22 186515
32 188016
79 263451
24 206349
57 210677
34 186032
82 136209
51 202563
44 206978
73 402509
26 193643
97 19819639
88 993409
45 197918
40 38850
96 5182557
31 30225
55 39821
52 36771
66 134269
23 18323
74 70318
91 259008
42 35466
99 46074295
53 37815
84 75254
39 34794
28 24118
38 30476
50 37373
68 250771
72 109872
46 46466
30 26685
83 70916
85 80035
21 18293
27 22718
77 61097
41 43790
37 29535
62 74879
89 178983
93 401123
64 104146
95 1886723
29 24756
25 20673
35 32884
71 164592
87 103627
65 110435
47 45659
92 245688
56 41357
94 690303
60 45241
80 63666
69 287189
54 38309
98 15041346
67 185059
59 42710
61 53388
36 29405
63 100833
58 42517
43 35473
90 275358
49 39202
33 32734
78 62584
81 64873
86 90175
76 61274
75 63610
48 44364
20 18367
70 257611
22 18808
32 32887
79 63675
24 18894
57 41363
34 33659
82 67483
51 35451
44 37836
73 81696
26 21617
97 5507377
88 133285
45 41912



Insert Size Plot

Insert Size Histogram
41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612434.41.isize.png