/EXTERNAL DEEP/K008990_K008991_K008992_K008993_K008994_K008995_K008996_K008997_K008998_K008999_K009000_K009001_K009002_K009003_K009004_K009005_16_lane_gembs/41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612438.41
BACK
SAMPLE K008990_K008991_K008992_K008993_K008994_K008995_K008996_K008997_K008998_K008999_K009000_K009001_K009002_K009003_K009004_K009005_16_lane_gembs LANE 41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612438.41
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 87264754 | 100.00 % | 43632377 | 100.00 % | 43632377 | 100.00 % |
| General Reads | 81646725 | 93.56 % | 41009204 | 93.99 % | 40637521 | 93.14 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 1893 | 0.00 % | 961 | 0.00 % | 932 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 5616136 | 6.44 % | 2622212 | 6.01 % | 2993924 | 6.86 % |
| Bisulfite_reads C2T | 41878081 | 47.99 % | 21015488 | 48.16 % | 20862593 | 47.81 % |
| Bisulfite_reads G2A | 39770537 | 45.57 % | 19994677 | 45.83 % | 19775860 | 45.32 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 23560236 |
| Average Unique | 54.00 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 3474071490 | 39.03 % | 1449731060 | 32.57 % | 2024340430 | 45.49 % |
| Base Counts Overall C | 971265239 | 10.91 % | 69078600 | 1.55 % | 902186639 | 20.27 % |
| Base Counts Overall G | 945350802 | 10.62 % | 887084448 | 19.93 % | 58266354 | 1.31 % |
| Base Counts Overall T | 3411958059 | 38.33 % | 2000018216 | 44.94 % | 1411939843 | 31.73 % |
| Base Counts Overall N | 98359318 | 1.11 % | 44590130 | 1.00 % | 53769188 | 1.21 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | 0.9940142584453802 |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 28982279 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 101 | 43632377 |
| 101 | 43632377 |
Insert Size Plot
| Insert Size Histogram |
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