Sample K008990_K008991_K008992_K008993_K008994_K008995_K008996_K008997_K008998_K008999_K009000_K009001_K009002_K009003_K009004_K009005_16_lane_gembs
====================================================================================================================================================

Mapping Stats (Reads)
---------------------

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |1659719660                                  |100.00 %                                    |829859830                                   |100.00 %                                    |829859830                                   |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |1582549358                                  |95.35 %                                     |794909983                                   |95.79 %                                     |787639375                                   |94.91 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |772920                                      |0.05 %                                      |389268                                      |0.05 %                                      |383652                                      |0.05 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |76397382                                    |4.60 %                                      |34560579                                    |4.16 %                                      |41836803                                    |5.04 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |810810393                                   |48.85 %                                     |407066006                                   |49.05 %                                     |403744387                                   |48.65 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |772511885                                   |46.54 %                                     |388233245                                   |46.78 %                                     |384278640                                   |46.31 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
----------------------

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |542377144                                  |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |65.36 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
---------------------

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |63173543721                                 |38.28 %                                     |25111081611                                 |30.79 %                                     |38062462110                                 |45.59 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |19520090745                                 |11.83 %                                     |1490938074                                  |1.83 %                                      |18029152671                                 |21.59 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |19304220983                                 |11.70 %                                     |17882864297                                 |21.93 %                                     |1421356686                                  |1.70 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |61248407595                                 |37.11 %                                     |36229364806                                 |44.42 %                                     |25019042789                                 |29.97 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |1805145948                                  |1.09 %                                      |845407524                                   |1.04 %                                      |959738424                                   |1.15 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
-------------------------

.. image:: K008990_K008991_K008992_K008993_K008994_K008995_K008996_K008997_K008998_K008999_K009000_K009001_K009002_K009003_K009004_K009005_16_lane_gembs_mapq.png

Bisulfite Conversion Rate
-------------------------

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |0.9942642442734205                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
---------------------

.. image:: K008990_K008991_K008992_K008993_K008994_K008995_K008996_K008997_K008998_K008999_K009000_K009001_K009002_K009003_K009004_K009005_16_lane_gembs_isize.png

Correct Pairs
-------------

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |651414647                                  |
+--------------------------------------------+-------------------------------------------+

Sample K008990_K008991_K008992_K008993_K008994_K008995_K008996_K008997_K008998_K008999_K009000_K009001_K009002_K009003_K009004_K009005_16_lane_gembs Lane 41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612338.41
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |163785974                                   |100.00 %                                    |81892987                                    |100.00 %                                    |81892987                                    |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |155626290                                   |95.02 %                                     |77906891                                    |95.13 %                                     |77719399                                    |94.90 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |3                                           |0.00 %                                      |1                                           |0.00 %                                      |2                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |8159681                                     |4.98 %                                      |3986095                                     |4.87 %                                      |4173586                                     |5.10 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |79215943                                    |48.37 %                                     |39653835                                    |48.42 %                                     |39562108                                    |48.31 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |76410350                                    |46.65 %                                     |38253057                                    |46.71 %                                     |38157293                                    |46.59 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |59012083                                   |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |72.06 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |5661497027                                  |37.07 %                                     |2082285297                                  |28.51 %                                     |3579211730                                  |44.93 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |2106342022                                  |13.79 %                                     |229502595                                   |3.14 %                                      |1876839427                                  |23.56 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |2071257365                                  |13.56 %                                     |1822157702                                  |24.94 %                                     |249099663                                   |3.13 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |5267227542                                  |34.49 %                                     |3089080814                                  |42.29 %                                     |2178146728                                  |27.34 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |164398321                                   |1.08 %                                      |81901611                                    |1.12 %                                      |82496710                                    |1.04 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |NA                                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Correct Pairs
^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |70015037                                   |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612338.41_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|40                                          |205696                                     |
+--------------------------------------------+-------------------------------------------+
|96                                          |4952651                                    |
+--------------------------------------------+-------------------------------------------+
|31                                          |196455                                     |
+--------------------------------------------+-------------------------------------------+
|55                                          |208495                                     |
+--------------------------------------------+-------------------------------------------+
|52                                          |208106                                     |
+--------------------------------------------+-------------------------------------------+
|66                                          |234365                                     |
+--------------------------------------------+-------------------------------------------+
|23                                          |195286                                     |
+--------------------------------------------+-------------------------------------------+
|74                                          |435158                                     |
+--------------------------------------------+-------------------------------------------+
|91                                          |2144567                                    |
+--------------------------------------------+-------------------------------------------+
|42                                          |212397                                     |
+--------------------------------------------+-------------------------------------------+
|53                                          |205613                                     |
+--------------------------------------------+-------------------------------------------+
|84                                          |186399                                     |
+--------------------------------------------+-------------------------------------------+
|39                                          |199449                                     |
+--------------------------------------------+-------------------------------------------+
|28                                          |198508                                     |
+--------------------------------------------+-------------------------------------------+
|38                                          |204255                                     |
+--------------------------------------------+-------------------------------------------+
|50                                          |210868                                     |
+--------------------------------------------+-------------------------------------------+
|68                                          |284484                                     |
+--------------------------------------------+-------------------------------------------+
|72                                          |296063                                     |
+--------------------------------------------+-------------------------------------------+
|46                                          |203256                                     |
+--------------------------------------------+-------------------------------------------+
|30                                          |194192                                     |
+--------------------------------------------+-------------------------------------------+
|83                                          |136310                                     |
+--------------------------------------------+-------------------------------------------+
|85                                          |249926                                     |
+--------------------------------------------+-------------------------------------------+
|21                                          |202890                                     |
+--------------------------------------------+-------------------------------------------+
|27                                          |198664                                     |
+--------------------------------------------+-------------------------------------------+
|77                                          |345012                                     |
+--------------------------------------------+-------------------------------------------+
|41                                          |205733                                     |
+--------------------------------------------+-------------------------------------------+
|37                                          |199969                                     |
+--------------------------------------------+-------------------------------------------+
|62                                          |216510                                     |
+--------------------------------------------+-------------------------------------------+
|89                                          |1925803                                    |
+--------------------------------------------+-------------------------------------------+
|93                                          |1160315                                    |
+--------------------------------------------+-------------------------------------------+
|64                                          |224860                                     |
+--------------------------------------------+-------------------------------------------+
|95                                          |2291918                                    |
+--------------------------------------------+-------------------------------------------+
|29                                          |196599                                     |
+--------------------------------------------+-------------------------------------------+
|25                                          |216966                                     |
+--------------------------------------------+-------------------------------------------+
|35                                          |196089                                     |
+--------------------------------------------+-------------------------------------------+
|71                                          |319767                                     |
+--------------------------------------------+-------------------------------------------+
|87                                          |538095                                     |
+--------------------------------------------+-------------------------------------------+
|65                                          |235398                                     |
+--------------------------------------------+-------------------------------------------+
|47                                          |202252                                     |
+--------------------------------------------+-------------------------------------------+
|92                                          |623566                                     |
+--------------------------------------------+-------------------------------------------+
|56                                          |213236                                     |
+--------------------------------------------+-------------------------------------------+
|94                                          |1509622                                    |
+--------------------------------------------+-------------------------------------------+
|60                                          |235735                                     |
+--------------------------------------------+-------------------------------------------+
|80                                          |243259                                     |
+--------------------------------------------+-------------------------------------------+
|69                                          |285525                                     |
+--------------------------------------------+-------------------------------------------+
|54                                          |211248                                     |
+--------------------------------------------+-------------------------------------------+
|98                                          |25320365                                   |
+--------------------------------------------+-------------------------------------------+
|67                                          |266183                                     |
+--------------------------------------------+-------------------------------------------+
|59                                          |243032                                     |
+--------------------------------------------+-------------------------------------------+
|61                                          |227006                                     |
+--------------------------------------------+-------------------------------------------+
|36                                          |200291                                     |
+--------------------------------------------+-------------------------------------------+
|63                                          |217754                                     |
+--------------------------------------------+-------------------------------------------+
|58                                          |230658                                     |
+--------------------------------------------+-------------------------------------------+
|43                                          |218927                                     |
+--------------------------------------------+-------------------------------------------+
|90                                          |4404387                                    |
+--------------------------------------------+-------------------------------------------+
|49                                          |208366                                     |
+--------------------------------------------+-------------------------------------------+
|33                                          |200530                                     |
+--------------------------------------------+-------------------------------------------+
|78                                          |294413                                     |
+--------------------------------------------+-------------------------------------------+
|81                                          |203057                                     |
+--------------------------------------------+-------------------------------------------+
|86                                          |374679                                     |
+--------------------------------------------+-------------------------------------------+
|76                                          |390753                                     |
+--------------------------------------------+-------------------------------------------+
|75                                          |434842                                     |
+--------------------------------------------+-------------------------------------------+
|48                                          |208487                                     |
+--------------------------------------------+-------------------------------------------+
|20                                          |205112                                     |
+--------------------------------------------+-------------------------------------------+
|70                                          |288041                                     |
+--------------------------------------------+-------------------------------------------+
|22                                          |195224                                     |
+--------------------------------------------+-------------------------------------------+
|32                                          |198721                                     |
+--------------------------------------------+-------------------------------------------+
|79                                          |264394                                     |
+--------------------------------------------+-------------------------------------------+
|24                                          |216160                                     |
+--------------------------------------------+-------------------------------------------+
|57                                          |218315                                     |
+--------------------------------------------+-------------------------------------------+
|34                                          |195135                                     |
+--------------------------------------------+-------------------------------------------+
|82                                          |142963                                     |
+--------------------------------------------+-------------------------------------------+
|51                                          |212079                                     |
+--------------------------------------------+-------------------------------------------+
|44                                          |215266                                     |
+--------------------------------------------+-------------------------------------------+
|73                                          |424952                                     |
+--------------------------------------------+-------------------------------------------+
|26                                          |202664                                     |
+--------------------------------------------+-------------------------------------------+
|97                                          |20268432                                   |
+--------------------------------------------+-------------------------------------------+
|88                                          |1034698                                    |
+--------------------------------------------+-------------------------------------------+
|45                                          |205571                                     |
+--------------------------------------------+-------------------------------------------+
|40                                          |40597                                      |
+--------------------------------------------+-------------------------------------------+
|96                                          |5315768                                    |
+--------------------------------------------+-------------------------------------------+
|31                                          |31491                                      |
+--------------------------------------------+-------------------------------------------+
|55                                          |40340                                      |
+--------------------------------------------+-------------------------------------------+
|52                                          |38336                                      |
+--------------------------------------------+-------------------------------------------+
|66                                          |134967                                     |
+--------------------------------------------+-------------------------------------------+
|23                                          |18953                                      |
+--------------------------------------------+-------------------------------------------+
|74                                          |71581                                      |
+--------------------------------------------+-------------------------------------------+
|91                                          |264203                                     |
+--------------------------------------------+-------------------------------------------+
|42                                          |38466                                      |
+--------------------------------------------+-------------------------------------------+
|99                                          |47017019                                   |
+--------------------------------------------+-------------------------------------------+
|53                                          |38843                                      |
+--------------------------------------------+-------------------------------------------+
|84                                          |78785                                      |
+--------------------------------------------+-------------------------------------------+
|39                                          |36343                                      |
+--------------------------------------------+-------------------------------------------+
|28                                          |24630                                      |
+--------------------------------------------+-------------------------------------------+
|38                                          |30996                                      |
+--------------------------------------------+-------------------------------------------+
|50                                          |38161                                      |
+--------------------------------------------+-------------------------------------------+
|68                                          |266628                                     |
+--------------------------------------------+-------------------------------------------+
|72                                          |110814                                     |
+--------------------------------------------+-------------------------------------------+
|46                                          |46712                                      |
+--------------------------------------------+-------------------------------------------+
|30                                          |27097                                      |
+--------------------------------------------+-------------------------------------------+
|83                                          |74462                                      |
+--------------------------------------------+-------------------------------------------+
|85                                          |84945                                      |
+--------------------------------------------+-------------------------------------------+
|21                                          |19043                                      |
+--------------------------------------------+-------------------------------------------+
|27                                          |23184                                      |
+--------------------------------------------+-------------------------------------------+
|77                                          |63638                                      |
+--------------------------------------------+-------------------------------------------+
|41                                          |47172                                      |
+--------------------------------------------+-------------------------------------------+
|37                                          |30024                                      |
+--------------------------------------------+-------------------------------------------+
|62                                          |75857                                      |
+--------------------------------------------+-------------------------------------------+
|89                                          |183690                                     |
+--------------------------------------------+-------------------------------------------+
|93                                          |421916                                     |
+--------------------------------------------+-------------------------------------------+
|64                                          |103073                                     |
+--------------------------------------------+-------------------------------------------+
|95                                          |1961966                                    |
+--------------------------------------------+-------------------------------------------+
|29                                          |24765                                      |
+--------------------------------------------+-------------------------------------------+
|25                                          |21582                                      |
+--------------------------------------------+-------------------------------------------+
|35                                          |34312                                      |
+--------------------------------------------+-------------------------------------------+
|71                                          |163642                                     |
+--------------------------------------------+-------------------------------------------+
|87                                          |110096                                     |
+--------------------------------------------+-------------------------------------------+
|65                                          |109740                                     |
+--------------------------------------------+-------------------------------------------+
|47                                          |46799                                      |
+--------------------------------------------+-------------------------------------------+
|92                                          |256882                                     |
+--------------------------------------------+-------------------------------------------+
|56                                          |42667                                      |
+--------------------------------------------+-------------------------------------------+
|94                                          |713998                                     |
+--------------------------------------------+-------------------------------------------+
|60                                          |45440                                      |
+--------------------------------------------+-------------------------------------------+
|80                                          |67129                                      |
+--------------------------------------------+-------------------------------------------+
|69                                          |283971                                     |
+--------------------------------------------+-------------------------------------------+
|54                                          |39891                                      |
+--------------------------------------------+-------------------------------------------+
|98                                          |15284361                                   |
+--------------------------------------------+-------------------------------------------+
|67                                          |177145                                     |
+--------------------------------------------+-------------------------------------------+
|59                                          |44437                                      |
+--------------------------------------------+-------------------------------------------+
|61                                          |54794                                      |
+--------------------------------------------+-------------------------------------------+
|36                                          |29877                                      |
+--------------------------------------------+-------------------------------------------+
|63                                          |101425                                     |
+--------------------------------------------+-------------------------------------------+
|58                                          |44291                                      |
+--------------------------------------------+-------------------------------------------+
|43                                          |36188                                      |
+--------------------------------------------+-------------------------------------------+
|90                                          |281177                                     |
+--------------------------------------------+-------------------------------------------+
|49                                          |39997                                      |
+--------------------------------------------+-------------------------------------------+
|33                                          |33468                                      |
+--------------------------------------------+-------------------------------------------+
|78                                          |64087                                      |
+--------------------------------------------+-------------------------------------------+
|81                                          |68571                                      |
+--------------------------------------------+-------------------------------------------+
|86                                          |94904                                      |
+--------------------------------------------+-------------------------------------------+
|76                                          |63997                                      |
+--------------------------------------------+-------------------------------------------+
|75                                          |65400                                      |
+--------------------------------------------+-------------------------------------------+
|48                                          |44832                                      |
+--------------------------------------------+-------------------------------------------+
|20                                          |18925                                      |
+--------------------------------------------+-------------------------------------------+
|70                                          |228487                                     |
+--------------------------------------------+-------------------------------------------+
|22                                          |19454                                      |
+--------------------------------------------+-------------------------------------------+
|32                                          |33124                                      |
+--------------------------------------------+-------------------------------------------+
|79                                          |65241                                      |
+--------------------------------------------+-------------------------------------------+
|24                                          |19472                                      |
+--------------------------------------------+-------------------------------------------+
|57                                          |42902                                      |
+--------------------------------------------+-------------------------------------------+
|34                                          |34939                                      |
+--------------------------------------------+-------------------------------------------+
|82                                          |71105                                      |
+--------------------------------------------+-------------------------------------------+
|51                                          |36799                                      |
+--------------------------------------------+-------------------------------------------+
|44                                          |38887                                      |
+--------------------------------------------+-------------------------------------------+
|73                                          |83432                                      |
+--------------------------------------------+-------------------------------------------+
|26                                          |21922                                      |
+--------------------------------------------+-------------------------------------------+
|97                                          |5707198                                    |
+--------------------------------------------+-------------------------------------------+
|88                                          |139004                                     |
+--------------------------------------------+-------------------------------------------+
|45                                          |42531                                      |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612338.41_isize.png

Sample K008990_K008991_K008992_K008993_K008994_K008995_K008996_K008997_K008998_K008999_K009000_K009001_K009002_K009003_K009004_K009005_16_lane_gembs Lane 41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612345.41
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |161298038                                   |100.00 %                                    |80649019                                    |100.00 %                                    |80649019                                    |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |152948863                                   |94.82 %                                     |76532040                                    |94.90 %                                     |76416823                                    |94.75 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |2                                           |0.00 %                                      |1                                           |0.00 %                                      |1                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |8349173                                     |5.18 %                                      |4116978                                     |5.10 %                                      |4232195                                     |5.25 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |77843649                                    |48.26 %                                     |38949841                                    |48.30 %                                     |38893808                                    |48.23 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |75105216                                    |46.56 %                                     |37582200                                    |46.60 %                                     |37523016                                    |46.53 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |57841954                                   |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |71.72 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |5562251466                                  |36.98 %                                     |2047296131                                  |28.43 %                                     |3514955335                                  |44.84 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |2085732987                                  |13.87 %                                     |231464615                                   |3.21 %                                      |1854268372                                  |23.65 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |2059214394                                  |13.69 %                                     |1803211219                                  |25.04 %                                     |256003175                                   |3.27 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |5170387604                                  |34.38 %                                     |3037828341                                  |42.19 %                                     |2132559263                                  |27.20 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |161913744                                   |1.08 %                                      |80659182                                    |1.12 %                                      |81254562                                    |1.04 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |NA                                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Correct Pairs
^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |68671883                                   |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612345.41_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|40                                          |197853                                     |
+--------------------------------------------+-------------------------------------------+
|96                                          |4914896                                    |
+--------------------------------------------+-------------------------------------------+
|31                                          |190151                                     |
+--------------------------------------------+-------------------------------------------+
|55                                          |204033                                     |
+--------------------------------------------+-------------------------------------------+
|52                                          |203723                                     |
+--------------------------------------------+-------------------------------------------+
|66                                          |227414                                     |
+--------------------------------------------+-------------------------------------------+
|23                                          |190130                                     |
+--------------------------------------------+-------------------------------------------+
|74                                          |481798                                     |
+--------------------------------------------+-------------------------------------------+
|91                                          |2104269                                    |
+--------------------------------------------+-------------------------------------------+
|42                                          |205788                                     |
+--------------------------------------------+-------------------------------------------+
|53                                          |198771                                     |
+--------------------------------------------+-------------------------------------------+
|84                                          |181930                                     |
+--------------------------------------------+-------------------------------------------+
|39                                          |192084                                     |
+--------------------------------------------+-------------------------------------------+
|28                                          |193084                                     |
+--------------------------------------------+-------------------------------------------+
|38                                          |197935                                     |
+--------------------------------------------+-------------------------------------------+
|50                                          |204364                                     |
+--------------------------------------------+-------------------------------------------+
|68                                          |278330                                     |
+--------------------------------------------+-------------------------------------------+
|72                                          |296173                                     |
+--------------------------------------------+-------------------------------------------+
|46                                          |198315                                     |
+--------------------------------------------+-------------------------------------------+
|30                                          |188331                                     |
+--------------------------------------------+-------------------------------------------+
|83                                          |131469                                     |
+--------------------------------------------+-------------------------------------------+
|85                                          |243703                                     |
+--------------------------------------------+-------------------------------------------+
|21                                          |195754                                     |
+--------------------------------------------+-------------------------------------------+
|27                                          |192954                                     |
+--------------------------------------------+-------------------------------------------+
|77                                          |324662                                     |
+--------------------------------------------+-------------------------------------------+
|41                                          |200172                                     |
+--------------------------------------------+-------------------------------------------+
|37                                          |193207                                     |
+--------------------------------------------+-------------------------------------------+
|62                                          |209913                                     |
+--------------------------------------------+-------------------------------------------+
|89                                          |1891807                                    |
+--------------------------------------------+-------------------------------------------+
|93                                          |1136984                                    |
+--------------------------------------------+-------------------------------------------+
|64                                          |219224                                     |
+--------------------------------------------+-------------------------------------------+
|95                                          |2236771                                    |
+--------------------------------------------+-------------------------------------------+
|29                                          |190157                                     |
+--------------------------------------------+-------------------------------------------+
|25                                          |210570                                     |
+--------------------------------------------+-------------------------------------------+
|35                                          |189237                                     |
+--------------------------------------------+-------------------------------------------+
|71                                          |318227                                     |
+--------------------------------------------+-------------------------------------------+
|87                                          |523120                                     |
+--------------------------------------------+-------------------------------------------+
|65                                          |231041                                     |
+--------------------------------------------+-------------------------------------------+
|47                                          |196374                                     |
+--------------------------------------------+-------------------------------------------+
|92                                          |612939                                     |
+--------------------------------------------+-------------------------------------------+
|56                                          |207718                                     |
+--------------------------------------------+-------------------------------------------+
|94                                          |1476494                                    |
+--------------------------------------------+-------------------------------------------+
|60                                          |229706                                     |
+--------------------------------------------+-------------------------------------------+
|80                                          |238963                                     |
+--------------------------------------------+-------------------------------------------+
|69                                          |285766                                     |
+--------------------------------------------+-------------------------------------------+
|54                                          |205006                                     |
+--------------------------------------------+-------------------------------------------+
|98                                          |25060050                                   |
+--------------------------------------------+-------------------------------------------+
|67                                          |267972                                     |
+--------------------------------------------+-------------------------------------------+
|59                                          |238484                                     |
+--------------------------------------------+-------------------------------------------+
|61                                          |221930                                     |
+--------------------------------------------+-------------------------------------------+
|36                                          |194418                                     |
+--------------------------------------------+-------------------------------------------+
|63                                          |212500                                     |
+--------------------------------------------+-------------------------------------------+
|58                                          |225063                                     |
+--------------------------------------------+-------------------------------------------+
|43                                          |212631                                     |
+--------------------------------------------+-------------------------------------------+
|90                                          |4308661                                    |
+--------------------------------------------+-------------------------------------------+
|49                                          |202867                                     |
+--------------------------------------------+-------------------------------------------+
|33                                          |194265                                     |
+--------------------------------------------+-------------------------------------------+
|78                                          |295060                                     |
+--------------------------------------------+-------------------------------------------+
|81                                          |198674                                     |
+--------------------------------------------+-------------------------------------------+
|86                                          |364243                                     |
+--------------------------------------------+-------------------------------------------+
|76                                          |383180                                     |
+--------------------------------------------+-------------------------------------------+
|75                                          |431758                                     |
+--------------------------------------------+-------------------------------------------+
|48                                          |201694                                     |
+--------------------------------------------+-------------------------------------------+
|20                                          |199657                                     |
+--------------------------------------------+-------------------------------------------+
|70                                          |285491                                     |
+--------------------------------------------+-------------------------------------------+
|22                                          |188787                                     |
+--------------------------------------------+-------------------------------------------+
|32                                          |193279                                     |
+--------------------------------------------+-------------------------------------------+
|79                                          |263209                                     |
+--------------------------------------------+-------------------------------------------+
|24                                          |210596                                     |
+--------------------------------------------+-------------------------------------------+
|57                                          |212816                                     |
+--------------------------------------------+-------------------------------------------+
|34                                          |189260                                     |
+--------------------------------------------+-------------------------------------------+
|82                                          |137601                                     |
+--------------------------------------------+-------------------------------------------+
|51                                          |205695                                     |
+--------------------------------------------+-------------------------------------------+
|44                                          |210038                                     |
+--------------------------------------------+-------------------------------------------+
|73                                          |415638                                     |
+--------------------------------------------+-------------------------------------------+
|26                                          |196375                                     |
+--------------------------------------------+-------------------------------------------+
|97                                          |19974380                                   |
+--------------------------------------------+-------------------------------------------+
|88                                          |1011770                                    |
+--------------------------------------------+-------------------------------------------+
|45                                          |199667                                     |
+--------------------------------------------+-------------------------------------------+
|40                                          |41067                                      |
+--------------------------------------------+-------------------------------------------+
|96                                          |5235700                                    |
+--------------------------------------------+-------------------------------------------+
|31                                          |36370                                      |
+--------------------------------------------+-------------------------------------------+
|55                                          |40482                                      |
+--------------------------------------------+-------------------------------------------+
|52                                          |38298                                      |
+--------------------------------------------+-------------------------------------------+
|66                                          |138346                                     |
+--------------------------------------------+-------------------------------------------+
|23                                          |20075                                      |
+--------------------------------------------+-------------------------------------------+
|74                                          |70016                                      |
+--------------------------------------------+-------------------------------------------+
|91                                          |262441                                     |
+--------------------------------------------+-------------------------------------------+
|42                                          |36702                                      |
+--------------------------------------------+-------------------------------------------+
|99                                          |46174799                                   |
+--------------------------------------------+-------------------------------------------+
|53                                          |39247                                      |
+--------------------------------------------+-------------------------------------------+
|84                                          |77973                                      |
+--------------------------------------------+-------------------------------------------+
|39                                          |36472                                      |
+--------------------------------------------+-------------------------------------------+
|28                                          |26435                                      |
+--------------------------------------------+-------------------------------------------+
|38                                          |31672                                      |
+--------------------------------------------+-------------------------------------------+
|50                                          |38580                                      |
+--------------------------------------------+-------------------------------------------+
|68                                          |260586                                     |
+--------------------------------------------+-------------------------------------------+
|72                                          |106680                                     |
+--------------------------------------------+-------------------------------------------+
|46                                          |48683                                      |
+--------------------------------------------+-------------------------------------------+
|30                                          |28913                                      |
+--------------------------------------------+-------------------------------------------+
|83                                          |73254                                      |
+--------------------------------------------+-------------------------------------------+
|85                                          |84659                                      |
+--------------------------------------------+-------------------------------------------+
|21                                          |20425                                      |
+--------------------------------------------+-------------------------------------------+
|27                                          |24451                                      |
+--------------------------------------------+-------------------------------------------+
|77                                          |63182                                      |
+--------------------------------------------+-------------------------------------------+
|41                                          |46523                                      |
+--------------------------------------------+-------------------------------------------+
|37                                          |29943                                      |
+--------------------------------------------+-------------------------------------------+
|62                                          |79635                                      |
+--------------------------------------------+-------------------------------------------+
|89                                          |183266                                     |
+--------------------------------------------+-------------------------------------------+
|93                                          |412855                                     |
+--------------------------------------------+-------------------------------------------+
|64                                          |107719                                     |
+--------------------------------------------+-------------------------------------------+
|95                                          |1922701                                    |
+--------------------------------------------+-------------------------------------------+
|29                                          |26865                                      |
+--------------------------------------------+-------------------------------------------+
|25                                          |21945                                      |
+--------------------------------------------+-------------------------------------------+
|35                                          |35232                                      |
+--------------------------------------------+-------------------------------------------+
|71                                          |162855                                     |
+--------------------------------------------+-------------------------------------------+
|87                                          |106663                                     |
+--------------------------------------------+-------------------------------------------+
|65                                          |114347                                     |
+--------------------------------------------+-------------------------------------------+
|47                                          |48188                                      |
+--------------------------------------------+-------------------------------------------+
|92                                          |252209                                     |
+--------------------------------------------+-------------------------------------------+
|56                                          |42846                                      |
+--------------------------------------------+-------------------------------------------+
|94                                          |697296                                     |
+--------------------------------------------+-------------------------------------------+
|60                                          |46127                                      |
+--------------------------------------------+-------------------------------------------+
|80                                          |66239                                      |
+--------------------------------------------+-------------------------------------------+
|69                                          |283642                                     |
+--------------------------------------------+-------------------------------------------+
|54                                          |39130                                      |
+--------------------------------------------+-------------------------------------------+
|98                                          |15113473                                   |
+--------------------------------------------+-------------------------------------------+
|67                                          |195132                                     |
+--------------------------------------------+-------------------------------------------+
|59                                          |44135                                      |
+--------------------------------------------+-------------------------------------------+
|61                                          |56105                                      |
+--------------------------------------------+-------------------------------------------+
|36                                          |29909                                      |
+--------------------------------------------+-------------------------------------------+
|63                                          |101678                                     |
+--------------------------------------------+-------------------------------------------+
|58                                          |43790                                      |
+--------------------------------------------+-------------------------------------------+
|43                                          |36309                                      |
+--------------------------------------------+-------------------------------------------+
|90                                          |282089                                     |
+--------------------------------------------+-------------------------------------------+
|49                                          |41434                                      |
+--------------------------------------------+-------------------------------------------+
|33                                          |37340                                      |
+--------------------------------------------+-------------------------------------------+
|78                                          |64653                                      |
+--------------------------------------------+-------------------------------------------+
|81                                          |67944                                      |
+--------------------------------------------+-------------------------------------------+
|86                                          |91970                                      |
+--------------------------------------------+-------------------------------------------+
|76                                          |63709                                      |
+--------------------------------------------+-------------------------------------------+
|75                                          |64743                                      |
+--------------------------------------------+-------------------------------------------+
|48                                          |46141                                      |
+--------------------------------------------+-------------------------------------------+
|20                                          |19116                                      |
+--------------------------------------------+-------------------------------------------+
|70                                          |247566                                     |
+--------------------------------------------+-------------------------------------------+
|22                                          |21716                                      |
+--------------------------------------------+-------------------------------------------+
|32                                          |35915                                      |
+--------------------------------------------+-------------------------------------------+
|79                                          |64726                                      |
+--------------------------------------------+-------------------------------------------+
|24                                          |19746                                      |
+--------------------------------------------+-------------------------------------------+
|57                                          |42660                                      |
+--------------------------------------------+-------------------------------------------+
|34                                          |37347                                      |
+--------------------------------------------+-------------------------------------------+
|82                                          |69699                                      |
+--------------------------------------------+-------------------------------------------+
|51                                          |36371                                      |
+--------------------------------------------+-------------------------------------------+
|44                                          |39352                                      |
+--------------------------------------------+-------------------------------------------+
|73                                          |81119                                      |
+--------------------------------------------+-------------------------------------------+
|26                                          |22662                                      |
+--------------------------------------------+-------------------------------------------+
|97                                          |5568084                                    |
+--------------------------------------------+-------------------------------------------+
|88                                          |137324                                     |
+--------------------------------------------+-------------------------------------------+
|45                                          |43328                                      |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612345.41_isize.png

Sample K008990_K008991_K008992_K008993_K008994_K008995_K008996_K008997_K008998_K008999_K009000_K009001_K009002_K009003_K009004_K009005_16_lane_gembs Lane 41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612309.41
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |79136736                                    |100.00 %                                    |39568368                                    |100.00 %                                    |39568368                                    |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |73927016                                    |93.42 %                                     |37071558                                    |93.69 %                                     |36855458                                    |93.14 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |1668                                        |0.00 %                                      |837                                         |0.00 %                                      |831                                         |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |5208052                                     |6.58 %                                      |2495973                                     |6.31 %                                      |2712079                                     |6.85 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |37951369                                    |47.96 %                                     |19017735                                    |48.06 %                                     |18933634                                    |47.85 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |35977315                                    |45.46 %                                     |18054660                                    |45.63 %                                     |17922655                                    |45.30 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |21260971                                   |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |53.73 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |3141776466                                  |38.92 %                                     |1323452288                                  |32.79 %                                     |1818324178                                  |45.05 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |889015296                                   |11.01 %                                     |71804924                                    |1.78 %                                      |817210372                                   |20.25 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |879873649                                   |10.90 %                                     |809694807                                   |20.06 %                                     |70178842                                    |1.74 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |3073837080                                  |38.08 %                                     |1791196835                                  |44.38 %                                     |1282640245                                  |31.78 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |87444581                                    |1.08 %                                      |39824682                                    |0.99 %                                      |47619899                                    |1.18 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |0.9939494115270618                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Correct Pairs
^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |26207652                                   |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612309.41_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|101                                         |39568368                                   |
+--------------------------------------------+-------------------------------------------+
|101                                         |39568368                                   |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612309.41_isize.png

Sample K008990_K008991_K008992_K008993_K008994_K008995_K008996_K008997_K008998_K008999_K009000_K009001_K009002_K009003_K009004_K009005_16_lane_gembs Lane 41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612160.41
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |112113704                                   |100.00 %                                    |56056852                                    |100.00 %                                    |56056852                                    |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |110381816                                   |98.46 %                                     |55534512                                    |99.07 %                                     |54847304                                    |97.84 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |190765                                      |0.17 %                                      |96102                                       |0.17 %                                      |94663                                       |0.17 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |1541123                                     |1.37 %                                      |426238                                      |0.76 %                                      |1114885                                     |1.99 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |56883001                                    |50.74 %                                     |28610122                                    |51.04 %                                     |28272879                                    |50.44 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |53689580                                    |47.89 %                                     |27020492                                    |48.20 %                                     |26669088                                    |47.58 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |43078166                                   |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |76.85 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |4393017568                                  |38.42 %                                     |1716695395                                  |30.02 %                                     |2676322173                                  |46.81 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |1282940981                                  |11.22 %                                     |49946383                                    |0.87 %                                      |1232994598                                  |21.56 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |1307257822                                  |11.43 %                                     |1267357604                                  |22.17 %                                     |39900218                                    |0.70 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |4331410495                                  |37.88 %                                     |2627447848                                  |45.95 %                                     |1703962647                                  |29.80 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |120970942                                   |1.06 %                                      |56351674                                    |0.99 %                                      |64619268                                    |1.13 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |0.994705036532508                          |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Correct Pairs
^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |51073237                                   |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612160.41_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|101                                         |56056852                                   |
+--------------------------------------------+-------------------------------------------+
|101                                         |56056852                                   |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612160.41_isize.png

Sample K008990_K008991_K008992_K008993_K008994_K008995_K008996_K008997_K008998_K008999_K009000_K009001_K009002_K009003_K009004_K009005_16_lane_gembs Lane 41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612438.41
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |87264754                                    |100.00 %                                    |43632377                                    |100.00 %                                    |43632377                                    |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |81646725                                    |93.56 %                                     |41009204                                    |93.99 %                                     |40637521                                    |93.14 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |1893                                        |0.00 %                                      |961                                         |0.00 %                                      |932                                         |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |5616136                                     |6.44 %                                      |2622212                                     |6.01 %                                      |2993924                                     |6.86 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |41878081                                    |47.99 %                                     |21015488                                    |48.16 %                                     |20862593                                    |47.81 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |39770537                                    |45.57 %                                     |19994677                                    |45.83 %                                     |19775860                                    |45.32 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |23560236                                   |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |54.00 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |3474071490                                  |39.03 %                                     |1449731060                                  |32.57 %                                     |2024340430                                  |45.49 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |971265239                                   |10.91 %                                     |69078600                                    |1.55 %                                      |902186639                                   |20.27 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |945350802                                   |10.62 %                                     |887084448                                   |19.93 %                                     |58266354                                    |1.31 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |3411958059                                  |38.33 %                                     |2000018216                                  |44.94 %                                     |1411939843                                  |31.73 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |98359318                                    |1.11 %                                      |44590130                                    |1.00 %                                      |53769188                                    |1.21 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |0.9940142584453802                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Correct Pairs
^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |28982279                                   |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612438.41_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|101                                         |43632377                                   |
+--------------------------------------------+-------------------------------------------+
|101                                         |43632377                                   |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612438.41_isize.png

Sample K008990_K008991_K008992_K008993_K008994_K008995_K008996_K008997_K008998_K008999_K009000_K009001_K009002_K009003_K009004_K009005_16_lane_gembs Lane 41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612351.41
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |110058600                                   |100.00 %                                    |55029300                                    |100.00 %                                    |55029300                                    |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |108323771                                   |98.42 %                                     |54496597                                    |99.03 %                                     |53827174                                    |97.82 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |187954                                      |0.17 %                                      |94656                                       |0.17 %                                      |93298                                       |0.17 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |1546875                                     |1.41 %                                      |438047                                      |0.80 %                                      |1108828                                     |2.01 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |55852613                                    |50.75 %                                     |28090063                                    |51.05 %                                     |27762550                                    |50.45 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |52659112                                    |47.85 %                                     |26501190                                    |48.16 %                                     |26157922                                    |47.53 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |42211560                                   |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |76.71 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |4308982429                                  |38.38 %                                     |1684665921                                  |30.01 %                                     |2624316508                                  |46.75 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |1265176785                                  |11.27 %                                     |49816183                                    |0.89 %                                      |1215360602                                  |21.65 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |1287467270                                  |11.47 %                                     |1247897274                                  |22.23 %                                     |39569996                                    |0.70 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |4247971550                                  |37.84 %                                     |2575405598                                  |45.88 %                                     |1672565952                                  |29.80 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |116379166                                   |1.04 %                                      |55203624                                    |0.98 %                                      |61175542                                    |1.09 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |0.9946001139766967                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Correct Pairs
^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |50114241                                   |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612351.41_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|101                                         |55029300                                   |
+--------------------------------------------+-------------------------------------------+
|101                                         |55029300                                   |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612351.41_isize.png

Sample K008990_K008991_K008992_K008993_K008994_K008995_K008996_K008997_K008998_K008999_K009000_K009001_K009002_K009003_K009004_K009005_16_lane_gembs Lane 41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612434.41
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |160313940                                   |100.00 %                                    |80156970                                    |100.00 %                                    |80156970                                    |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |152084406                                   |94.87 %                                     |76131273                                    |94.98 %                                     |75953133                                    |94.76 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |1                                           |0.00 %                                      |0                                           |0.00 %                                      |1                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |8229533                                     |5.13 %                                      |4025697                                     |5.02 %                                      |4203836                                     |5.24 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |77397721                                    |48.28 %                                     |38742447                                    |48.33 %                                     |38655274                                    |48.22 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |74686686                                    |46.59 %                                     |37388826                                    |46.64 %                                     |37297860                                    |46.53 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |57495213                                   |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |71.73 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |5527146221                                  |36.95 %                                     |2034030874                                  |28.39 %                                     |3493115347                                  |44.80 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |2077281197                                  |13.89 %                                     |229176575                                   |3.20 %                                      |1848104622                                  |23.70 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |2046771839                                  |13.68 %                                     |1796525838                                  |25.08 %                                     |250246001                                   |3.21 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |5147266551                                  |34.41 %                                     |3023033884                                  |42.20 %                                     |2124232667                                  |27.25 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |161906496                                   |1.08 %                                      |81094526                                    |1.13 %                                      |80811970                                    |1.04 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |NA                                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Correct Pairs
^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |68278711                                   |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612434.41_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|40                                          |194073                                     |
+--------------------------------------------+-------------------------------------------+
|96                                          |4884395                                    |
+--------------------------------------------+-------------------------------------------+
|31                                          |187825                                     |
+--------------------------------------------+-------------------------------------------+
|55                                          |200766                                     |
+--------------------------------------------+-------------------------------------------+
|52                                          |200312                                     |
+--------------------------------------------+-------------------------------------------+
|66                                          |224348                                     |
+--------------------------------------------+-------------------------------------------+
|23                                          |187051                                     |
+--------------------------------------------+-------------------------------------------+
|74                                          |431275                                     |
+--------------------------------------------+-------------------------------------------+
|91                                          |2091335                                    |
+--------------------------------------------+-------------------------------------------+
|42                                          |203319                                     |
+--------------------------------------------+-------------------------------------------+
|53                                          |197128                                     |
+--------------------------------------------+-------------------------------------------+
|84                                          |178169                                     |
+--------------------------------------------+-------------------------------------------+
|39                                          |189176                                     |
+--------------------------------------------+-------------------------------------------+
|28                                          |189377                                     |
+--------------------------------------------+-------------------------------------------+
|38                                          |194502                                     |
+--------------------------------------------+-------------------------------------------+
|50                                          |203223                                     |
+--------------------------------------------+-------------------------------------------+
|68                                          |274729                                     |
+--------------------------------------------+-------------------------------------------+
|72                                          |285545                                     |
+--------------------------------------------+-------------------------------------------+
|46                                          |194992                                     |
+--------------------------------------------+-------------------------------------------+
|30                                          |184456                                     |
+--------------------------------------------+-------------------------------------------+
|83                                          |128517                                     |
+--------------------------------------------+-------------------------------------------+
|85                                          |237322                                     |
+--------------------------------------------+-------------------------------------------+
|21                                          |193980                                     |
+--------------------------------------------+-------------------------------------------+
|27                                          |188428                                     |
+--------------------------------------------+-------------------------------------------+
|77                                          |342227                                     |
+--------------------------------------------+-------------------------------------------+
|41                                          |197981                                     |
+--------------------------------------------+-------------------------------------------+
|37                                          |190566                                     |
+--------------------------------------------+-------------------------------------------+
|62                                          |207361                                     |
+--------------------------------------------+-------------------------------------------+
|89                                          |1864477                                    |
+--------------------------------------------+-------------------------------------------+
|93                                          |1124906                                    |
+--------------------------------------------+-------------------------------------------+
|64                                          |216348                                     |
+--------------------------------------------+-------------------------------------------+
|95                                          |2210482                                    |
+--------------------------------------------+-------------------------------------------+
|29                                          |186746                                     |
+--------------------------------------------+-------------------------------------------+
|25                                          |206769                                     |
+--------------------------------------------+-------------------------------------------+
|35                                          |186632                                     |
+--------------------------------------------+-------------------------------------------+
|71                                          |313138                                     |
+--------------------------------------------+-------------------------------------------+
|87                                          |513876                                     |
+--------------------------------------------+-------------------------------------------+
|65                                          |226536                                     |
+--------------------------------------------+-------------------------------------------+
|47                                          |194010                                     |
+--------------------------------------------+-------------------------------------------+
|92                                          |604833                                     |
+--------------------------------------------+-------------------------------------------+
|56                                          |204520                                     |
+--------------------------------------------+-------------------------------------------+
|94                                          |1463862                                    |
+--------------------------------------------+-------------------------------------------+
|60                                          |226266                                     |
+--------------------------------------------+-------------------------------------------+
|80                                          |236533                                     |
+--------------------------------------------+-------------------------------------------+
|69                                          |279194                                     |
+--------------------------------------------+-------------------------------------------+
|54                                          |204065                                     |
+--------------------------------------------+-------------------------------------------+
|98                                          |25170556                                   |
+--------------------------------------------+-------------------------------------------+
|67                                          |256486                                     |
+--------------------------------------------+-------------------------------------------+
|59                                          |234596                                     |
+--------------------------------------------+-------------------------------------------+
|61                                          |218327                                     |
+--------------------------------------------+-------------------------------------------+
|36                                          |192036                                     |
+--------------------------------------------+-------------------------------------------+
|63                                          |208899                                     |
+--------------------------------------------+-------------------------------------------+
|58                                          |221604                                     |
+--------------------------------------------+-------------------------------------------+
|43                                          |210987                                     |
+--------------------------------------------+-------------------------------------------+
|90                                          |4284513                                    |
+--------------------------------------------+-------------------------------------------+
|49                                          |199946                                     |
+--------------------------------------------+-------------------------------------------+
|33                                          |189923                                     |
+--------------------------------------------+-------------------------------------------+
|78                                          |287669                                     |
+--------------------------------------------+-------------------------------------------+
|81                                          |198303                                     |
+--------------------------------------------+-------------------------------------------+
|86                                          |358281                                     |
+--------------------------------------------+-------------------------------------------+
|76                                          |383467                                     |
+--------------------------------------------+-------------------------------------------+
|75                                          |427955                                     |
+--------------------------------------------+-------------------------------------------+
|48                                          |199277                                     |
+--------------------------------------------+-------------------------------------------+
|20                                          |196220                                     |
+--------------------------------------------+-------------------------------------------+
|70                                          |278446                                     |
+--------------------------------------------+-------------------------------------------+
|22                                          |186515                                     |
+--------------------------------------------+-------------------------------------------+
|32                                          |188016                                     |
+--------------------------------------------+-------------------------------------------+
|79                                          |263451                                     |
+--------------------------------------------+-------------------------------------------+
|24                                          |206349                                     |
+--------------------------------------------+-------------------------------------------+
|57                                          |210677                                     |
+--------------------------------------------+-------------------------------------------+
|34                                          |186032                                     |
+--------------------------------------------+-------------------------------------------+
|82                                          |136209                                     |
+--------------------------------------------+-------------------------------------------+
|51                                          |202563                                     |
+--------------------------------------------+-------------------------------------------+
|44                                          |206978                                     |
+--------------------------------------------+-------------------------------------------+
|73                                          |402509                                     |
+--------------------------------------------+-------------------------------------------+
|26                                          |193643                                     |
+--------------------------------------------+-------------------------------------------+
|97                                          |19819639                                   |
+--------------------------------------------+-------------------------------------------+
|88                                          |993409                                     |
+--------------------------------------------+-------------------------------------------+
|45                                          |197918                                     |
+--------------------------------------------+-------------------------------------------+
|40                                          |38850                                      |
+--------------------------------------------+-------------------------------------------+
|96                                          |5182557                                    |
+--------------------------------------------+-------------------------------------------+
|31                                          |30225                                      |
+--------------------------------------------+-------------------------------------------+
|55                                          |39821                                      |
+--------------------------------------------+-------------------------------------------+
|52                                          |36771                                      |
+--------------------------------------------+-------------------------------------------+
|66                                          |134269                                     |
+--------------------------------------------+-------------------------------------------+
|23                                          |18323                                      |
+--------------------------------------------+-------------------------------------------+
|74                                          |70318                                      |
+--------------------------------------------+-------------------------------------------+
|91                                          |259008                                     |
+--------------------------------------------+-------------------------------------------+
|42                                          |35466                                      |
+--------------------------------------------+-------------------------------------------+
|99                                          |46074295                                   |
+--------------------------------------------+-------------------------------------------+
|53                                          |37815                                      |
+--------------------------------------------+-------------------------------------------+
|84                                          |75254                                      |
+--------------------------------------------+-------------------------------------------+
|39                                          |34794                                      |
+--------------------------------------------+-------------------------------------------+
|28                                          |24118                                      |
+--------------------------------------------+-------------------------------------------+
|38                                          |30476                                      |
+--------------------------------------------+-------------------------------------------+
|50                                          |37373                                      |
+--------------------------------------------+-------------------------------------------+
|68                                          |250771                                     |
+--------------------------------------------+-------------------------------------------+
|72                                          |109872                                     |
+--------------------------------------------+-------------------------------------------+
|46                                          |46466                                      |
+--------------------------------------------+-------------------------------------------+
|30                                          |26685                                      |
+--------------------------------------------+-------------------------------------------+
|83                                          |70916                                      |
+--------------------------------------------+-------------------------------------------+
|85                                          |80035                                      |
+--------------------------------------------+-------------------------------------------+
|21                                          |18293                                      |
+--------------------------------------------+-------------------------------------------+
|27                                          |22718                                      |
+--------------------------------------------+-------------------------------------------+
|77                                          |61097                                      |
+--------------------------------------------+-------------------------------------------+
|41                                          |43790                                      |
+--------------------------------------------+-------------------------------------------+
|37                                          |29535                                      |
+--------------------------------------------+-------------------------------------------+
|62                                          |74879                                      |
+--------------------------------------------+-------------------------------------------+
|89                                          |178983                                     |
+--------------------------------------------+-------------------------------------------+
|93                                          |401123                                     |
+--------------------------------------------+-------------------------------------------+
|64                                          |104146                                     |
+--------------------------------------------+-------------------------------------------+
|95                                          |1886723                                    |
+--------------------------------------------+-------------------------------------------+
|29                                          |24756                                      |
+--------------------------------------------+-------------------------------------------+
|25                                          |20673                                      |
+--------------------------------------------+-------------------------------------------+
|35                                          |32884                                      |
+--------------------------------------------+-------------------------------------------+
|71                                          |164592                                     |
+--------------------------------------------+-------------------------------------------+
|87                                          |103627                                     |
+--------------------------------------------+-------------------------------------------+
|65                                          |110435                                     |
+--------------------------------------------+-------------------------------------------+
|47                                          |45659                                      |
+--------------------------------------------+-------------------------------------------+
|92                                          |245688                                     |
+--------------------------------------------+-------------------------------------------+
|56                                          |41357                                      |
+--------------------------------------------+-------------------------------------------+
|94                                          |690303                                     |
+--------------------------------------------+-------------------------------------------+
|60                                          |45241                                      |
+--------------------------------------------+-------------------------------------------+
|80                                          |63666                                      |
+--------------------------------------------+-------------------------------------------+
|69                                          |287189                                     |
+--------------------------------------------+-------------------------------------------+
|54                                          |38309                                      |
+--------------------------------------------+-------------------------------------------+
|98                                          |15041346                                   |
+--------------------------------------------+-------------------------------------------+
|67                                          |185059                                     |
+--------------------------------------------+-------------------------------------------+
|59                                          |42710                                      |
+--------------------------------------------+-------------------------------------------+
|61                                          |53388                                      |
+--------------------------------------------+-------------------------------------------+
|36                                          |29405                                      |
+--------------------------------------------+-------------------------------------------+
|63                                          |100833                                     |
+--------------------------------------------+-------------------------------------------+
|58                                          |42517                                      |
+--------------------------------------------+-------------------------------------------+
|43                                          |35473                                      |
+--------------------------------------------+-------------------------------------------+
|90                                          |275358                                     |
+--------------------------------------------+-------------------------------------------+
|49                                          |39202                                      |
+--------------------------------------------+-------------------------------------------+
|33                                          |32734                                      |
+--------------------------------------------+-------------------------------------------+
|78                                          |62584                                      |
+--------------------------------------------+-------------------------------------------+
|81                                          |64873                                      |
+--------------------------------------------+-------------------------------------------+
|86                                          |90175                                      |
+--------------------------------------------+-------------------------------------------+
|76                                          |61274                                      |
+--------------------------------------------+-------------------------------------------+
|75                                          |63610                                      |
+--------------------------------------------+-------------------------------------------+
|48                                          |44364                                      |
+--------------------------------------------+-------------------------------------------+
|20                                          |18367                                      |
+--------------------------------------------+-------------------------------------------+
|70                                          |257611                                     |
+--------------------------------------------+-------------------------------------------+
|22                                          |18808                                      |
+--------------------------------------------+-------------------------------------------+
|32                                          |32887                                      |
+--------------------------------------------+-------------------------------------------+
|79                                          |63675                                      |
+--------------------------------------------+-------------------------------------------+
|24                                          |18894                                      |
+--------------------------------------------+-------------------------------------------+
|57                                          |41363                                      |
+--------------------------------------------+-------------------------------------------+
|34                                          |33659                                      |
+--------------------------------------------+-------------------------------------------+
|82                                          |67483                                      |
+--------------------------------------------+-------------------------------------------+
|51                                          |35451                                      |
+--------------------------------------------+-------------------------------------------+
|44                                          |37836                                      |
+--------------------------------------------+-------------------------------------------+
|73                                          |81696                                      |
+--------------------------------------------+-------------------------------------------+
|26                                          |21617                                      |
+--------------------------------------------+-------------------------------------------+
|97                                          |5507377                                    |
+--------------------------------------------+-------------------------------------------+
|88                                          |133285                                     |
+--------------------------------------------+-------------------------------------------+
|45                                          |41912                                      |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612434.41_isize.png

Sample K008990_K008991_K008992_K008993_K008994_K008995_K008996_K008997_K008998_K008999_K009000_K009001_K009002_K009003_K009004_K009005_16_lane_gembs Lane 41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612149.41
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |78450088                                    |100.00 %                                    |39225044                                    |100.00 %                                    |39225044                                    |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |73126956                                    |93.21 %                                     |36629863                                    |93.38 %                                     |36497093                                    |93.05 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |1846                                        |0.00 %                                      |927                                         |0.00 %                                      |919                                         |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |5321286                                     |6.78 %                                      |2594254                                     |6.61 %                                      |2727032                                     |6.95 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |37444389                                    |47.73 %                                     |18738382                                    |47.77 %                                     |18706007                                    |47.69 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |35684413                                    |45.49 %                                     |17892408                                    |45.61 %                                     |17792005                                    |45.36 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |20864972                                   |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |53.19 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |3118975833                                  |38.98 %                                     |1304277511                                  |32.60 %                                     |1814698322                                  |45.36 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |876754306                                   |10.96 %                                     |61946067                                    |1.55 %                                      |814808239                                   |20.37 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |835219202                                   |10.44 %                                     |785902531                                   |19.64 %                                     |49316671                                    |1.23 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |3077926202                                  |38.46 %                                     |1807951249                                  |45.19 %                                     |1269974953                                  |31.74 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |93033433                                    |1.16 %                                      |40877130                                    |1.02 %                                      |52156303                                    |1.30 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |0.9300387644566774                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Correct Pairs
^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |25529775                                   |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612149.41_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|101                                         |39225044                                   |
+--------------------------------------------+-------------------------------------------+
|101                                         |39225044                                   |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612149.41_isize.png

Sample K008990_K008991_K008992_K008993_K008994_K008995_K008996_K008997_K008998_K008999_K009000_K009001_K009002_K009003_K009004_K009005_16_lane_gembs Lane 41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612287.41
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |77692892                                    |100.00 %                                    |38846446                                    |100.00 %                                    |38846446                                    |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |73112532                                    |94.10 %                                     |36991477                                    |95.22 %                                     |36121055                                    |92.98 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |1665                                        |0.00 %                                      |838                                         |0.00 %                                      |827                                         |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |4578695                                     |5.89 %                                      |1854131                                     |4.77 %                                      |2724564                                     |7.01 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |37453678                                    |48.21 %                                     |18928919                                    |48.73 %                                     |18524759                                    |47.69 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |35660519                                    |45.90 %                                     |18063396                                    |46.50 %                                     |17597123                                    |45.30 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |20986640                                   |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |54.02 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |3100681064                                  |39.13 %                                     |1293710571                                  |32.65 %                                     |1806970493                                  |45.60 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |857454458                                   |10.82 %                                     |57497975                                    |1.45 %                                      |799956483                                   |20.19 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |833643038                                   |10.52 %                                     |785208813                                   |19.82 %                                     |48434225                                    |1.22 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |3046016854                                  |38.44 %                                     |1786393909                                  |45.08 %                                     |1259622945                                  |31.79 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |86879570                                    |1.10 %                                      |39526224                                    |1.00 %                                      |47353346                                    |1.20 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |0.9925549907669778                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Correct Pairs
^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |25702678                                   |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612287.41_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|101                                         |38846446                                   |
+--------------------------------------------+-------------------------------------------+
|101                                         |38846446                                   |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612287.41_isize.png

Sample K008990_K008991_K008992_K008993_K008994_K008995_K008996_K008997_K008998_K008999_K009000_K009001_K009002_K009003_K009004_K009005_16_lane_gembs Lane 41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612232.41
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |81098826                                    |100.00 %                                    |40549413                                    |100.00 %                                    |40549413                                    |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |76450727                                    |94.27 %                                     |38513683                                    |94.98 %                                     |37937044                                    |93.56 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |1767                                        |0.00 %                                      |885                                         |0.00 %                                      |882                                         |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |4646332                                     |5.73 %                                      |2034845                                     |5.02 %                                      |2611487                                     |6.44 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |39197824                                    |48.33 %                                     |19728221                                    |48.65 %                                     |19469603                                    |48.01 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |37254670                                    |45.94 %                                     |18786347                                    |46.33 %                                     |18468323                                    |45.55 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |22157716                                   |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |54.64 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |3228298784                                  |39.03 %                                     |1347517576                                  |32.58 %                                     |1880781208                                  |45.47 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |900053600                                   |10.88 %                                     |62822281                                    |1.52 %                                      |837231319                                   |20.24 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |880700987                                   |10.65 %                                     |827248783                                   |20.00 %                                     |53452204                                    |1.29 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |3169902914                                  |38.32 %                                     |1856917343                                  |44.90 %                                     |1312985571                                  |31.74 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |93123967                                    |1.13 %                                      |41534143                                    |1.00 %                                      |51589824                                    |1.25 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |0.9948232974265344                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Correct Pairs
^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |27162215                                   |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612232.41_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|101                                         |40549413                                   |
+--------------------------------------------+-------------------------------------------+
|101                                         |40549413                                   |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612232.41_isize.png

Sample K008990_K008991_K008992_K008993_K008994_K008995_K008996_K008997_K008998_K008999_K009000_K009001_K009002_K009003_K009004_K009005_16_lane_gembs Lane 41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612333.41
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |82953748                                    |100.00 %                                    |41476874                                    |100.00 %                                    |41476874                                    |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |77895943                                    |93.90 %                                     |39174939                                    |94.45 %                                     |38721004                                    |93.36 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |1907                                        |0.00 %                                      |959                                         |0.00 %                                      |948                                         |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |5055898                                     |6.09 %                                      |2300976                                     |5.55 %                                      |2754922                                     |6.64 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |39962869                                    |48.17 %                                     |20081863                                    |48.42 %                                     |19881006                                    |47.93 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |37934981                                    |45.73 %                                     |19094035                                    |46.04 %                                     |18840946                                    |45.43 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |22418809                                   |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |54.05 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |3297718808                                  |38.97 %                                     |1389885056                                  |32.85 %                                     |1907833752                                  |45.10 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |927456174                                   |10.96 %                                     |73903249                                    |1.75 %                                      |853552925                                   |20.18 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |924183629                                   |10.92 %                                     |851744885                                   |20.13 %                                     |72438744                                    |1.71 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |3218323907                                  |38.04 %                                     |1873172227                                  |44.28 %                                     |1345151680                                  |31.80 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |93599778                                    |1.11 %                                      |41935731                                    |0.99 %                                      |51664047                                    |1.22 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |0.9944285334976662                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Correct Pairs
^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |27573084                                   |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612333.41_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|101                                         |41476874                                   |
+--------------------------------------------+-------------------------------------------+
|101                                         |41476874                                   |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612333.41_isize.png

Sample K008990_K008991_K008992_K008993_K008994_K008995_K008996_K008997_K008998_K008999_K009000_K009001_K009002_K009003_K009004_K009005_16_lane_gembs Lane 41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612299.41
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |110682666                                   |100.00 %                                    |55341333                                    |100.00 %                                    |55341333                                    |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |108968187                                   |98.45 %                                     |54800550                                    |99.02 %                                     |54167637                                    |97.88 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |188660                                      |0.17 %                                      |95000                                       |0.17 %                                      |93660                                       |0.17 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |1525819                                     |1.38 %                                      |445783                                      |0.81 %                                      |1080036                                     |1.95 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |56164964                                    |50.74 %                                     |28236379                                    |51.02 %                                     |27928585                                    |50.47 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |52991883                                    |47.88 %                                     |26659171                                    |48.17 %                                     |26332712                                    |47.58 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |42485074                                   |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |76.77 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |4332578071                                  |38.38 %                                     |1692467626                                  |29.98 %                                     |2640110445                                  |46.77 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |1270702004                                  |11.26 %                                     |50419058                                    |0.89 %                                      |1220282946                                  |21.62 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |1291402063                                  |11.44 %                                     |1253983788                                  |22.21 %                                     |37418275                                    |0.66 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |4277836328                                  |37.89 %                                     |2592487465                                  |45.93 %                                     |1685348863                                  |29.86 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |117113466                                   |1.04 %                                      |55458029                                    |0.98 %                                      |61655437                                    |1.09 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |0.9946019483143694                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Correct Pairs
^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |50409033                                   |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612299.41_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|101                                         |55341333                                   |
+--------------------------------------------+-------------------------------------------+
|101                                         |55341333                                   |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612299.41_isize.png

Sample K008990_K008991_K008992_K008993_K008994_K008995_K008996_K008997_K008998_K008999_K009000_K009001_K009002_K009003_K009004_K009005_16_lane_gembs Lane 41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612206.41
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |87578746                                    |100.00 %                                    |43789373                                    |100.00 %                                    |43789373                                    |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |81963441                                    |93.59 %                                     |41236137                                    |94.17 %                                     |40727304                                    |93.01 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |2108                                        |0.00 %                                      |1068                                        |0.00 %                                      |1040                                        |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |5613197                                     |6.41 %                                      |2552168                                     |5.83 %                                      |3061029                                     |6.99 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |42006117                                    |47.96 %                                     |21111429                                    |48.21 %                                     |20894688                                    |47.72 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |39959432                                    |45.63 %                                     |20125776                                    |45.96 %                                     |19833656                                    |45.29 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |23730167                                   |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |54.19 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |3472514556                                  |38.87 %                                     |1452817007                                  |32.53 %                                     |2019697549                                  |45.22 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |986333887                                   |11.04 %                                     |76489398                                    |1.71 %                                      |909844489                                   |20.37 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |953608680                                   |10.68 %                                     |894471440                                   |20.03 %                                     |59137240                                    |1.32 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |3414108704                                  |38.22 %                                     |1995038775                                  |44.67 %                                     |1419069929                                  |31.77 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |106466265                                   |1.19 %                                      |47699426                                    |1.07 %                                      |58766839                                    |1.32 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |0.9339290221503284                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Correct Pairs
^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |28991718                                   |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612206.41_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|101                                         |43789373                                   |
+--------------------------------------------+-------------------------------------------+
|101                                         |43789373                                   |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612206.41_isize.png

Sample K008990_K008991_K008992_K008993_K008994_K008995_K008996_K008997_K008998_K008999_K009000_K009001_K009002_K009003_K009004_K009005_16_lane_gembs Lane 41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612392.41
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |70186278                                    |100.00 %                                    |35093139                                    |100.00 %                                    |35093139                                    |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |66064512                                    |94.13 %                                     |33261533                                    |94.78 %                                     |32802979                                    |93.47 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |1497                                        |0.00 %                                      |752                                         |0.00 %                                      |745                                         |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |4120269                                     |5.87 %                                      |1830854                                     |5.22 %                                      |2289415                                     |6.52 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |33847519                                    |48.23 %                                     |17026493                                    |48.52 %                                     |16821026                                    |47.93 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |32218490                                    |45.90 %                                     |16235792                                    |46.26 %                                     |15982698                                    |45.54 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |18981859                                   |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |54.09 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |2800089468                                  |39.11 %                                     |1169002655                                  |32.66 %                                     |1631086813                                  |45.57 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |774510369                                   |10.82 %                                     |52417845                                    |1.46 %                                      |722092524                                   |20.17 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |751342152                                   |10.50 %                                     |707823624                                   |19.77 %                                     |43518528                                    |1.22 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |2751779904                                  |38.44 %                                     |1613884849                                  |45.09 %                                     |1137895055                                  |31.79 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |81278463                                    |1.14 %                                      |36371205                                    |1.02 %                                      |44907258                                    |1.25 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |0.9951224886753693                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Correct Pairs
^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |23266835                                   |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612392.41_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|101                                         |35093139                                   |
+--------------------------------------------+-------------------------------------------+
|101                                         |35093139                                   |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612392.41_isize.png

Sample K008990_K008991_K008992_K008993_K008994_K008995_K008996_K008997_K008998_K008999_K009000_K009001_K009002_K009003_K009004_K009005_16_lane_gembs Lane 41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612310.41
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |84996406                                    |100.00 %                                    |42498203                                    |100.00 %                                    |42498203                                    |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |79605679                                    |93.66 %                                     |40098501                                    |94.35 %                                     |39507178                                    |92.96 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |2066                                        |0.00 %                                      |1047                                        |0.00 %                                      |1019                                        |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |5388661                                     |6.34 %                                      |2398655                                     |5.64 %                                      |2990006                                     |7.04 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |40808474                                    |48.01 %                                     |20532118                                    |48.31 %                                     |20276356                                    |47.71 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |38799271                                    |45.65 %                                     |19567430                                    |46.04 %                                     |19231841                                    |45.25 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |23163277                                   |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |54.50 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |3363659316                                  |38.80 %                                     |1407123683                                  |32.46 %                                     |1956535633                                  |45.14 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |962252535                                   |11.10 %                                     |74214669                                    |1.71 %                                      |888037866                                   |20.49 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |930560137                                   |10.73 %                                     |875314724                                   |20.19 %                                     |55245413                                    |1.27 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |3308808334                                  |38.17 %                                     |1932114786                                  |44.57 %                                     |1376693548                                  |31.76 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |104353090                                   |1.20 %                                      |46048844                                    |1.06 %                                      |58304246                                    |1.35 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |0.9467547766431484                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Correct Pairs
^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |28310640                                   |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612310.41_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|101                                         |42498203                                   |
+--------------------------------------------+-------------------------------------------+
|101                                         |42498203                                   |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612310.41_isize.png

Sample K008990_K008991_K008992_K008993_K008994_K008995_K008996_K008997_K008998_K008999_K009000_K009001_K009002_K009003_K009004_K009005_16_lane_gembs Lane 41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612431.41
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Mapping Stats (Reads)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                 |%                                           |P1 Reads                                    |%                                           |P2 Reads                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Sequenced Reads                             |112108264                                   |100.00 %                                    |56054132                                    |100.00 %                                    |56054132                                    |100.00 %                                   |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|General Reads                               |110422494                                   |98.50 %                                     |55521225                                    |99.05 %                                     |54901269                                    |97.94 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads in Control sequences                  |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads under conversion control              |189118                                      |0.17 %                                      |95234                                       |0.17 %                                      |93884                                       |0.17 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Reads over conversion control               |0                                           |0.00 %                                      |0                                           |0.00 %                                      |0                                           |0.00 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Unmapped reads                              |1496652                                     |1.34 %                                      |437673                                      |0.78 %                                      |1058979                                     |1.89 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads C2T                         |56902182                                    |50.76 %                                     |28602671                                    |51.03 %                                     |28299511                                    |50.49 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Bisulfite_reads G2A                         |53709430                                    |47.91 %                                     |27013788                                    |48.19 %                                     |26695642                                    |47.62 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Uniqueness (Fragments)
^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Value                                      |
+============================================+===========================================+
|Unique Fragments                            |43128447                                   |
+--------------------------------------------+-------------------------------------------+
|Average Unique                              |76.94 %                                    |
+--------------------------------------------+-------------------------------------------+

Mapping Stats (Bases)
^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Bases                                 |%                                           |P1 Bases                                    |%                                           |P2 Bases                                    |%                                          |
+============================================+============================================+============================================+============================================+============================================+============================================+===========================================+
|Base Counts Overall A                       |4390285154                                  |38.39 %                                     |1716122960                                  |30.02 %                                     |2674162194                                  |46.77 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall C                       |1286818905                                  |11.25 %                                     |50437657                                    |0.88 %                                      |1236381248                                  |21.62 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall G                       |1306367954                                  |11.42 %                                     |1267236817                                  |22.16 %                                     |39131137                                    |0.68 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall T                       |4333645567                                  |37.90 %                                     |2627392667                                  |45.95 %                                     |1706252900                                  |29.84 %                                    |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+
|Base Counts Overall N                       |117925348                                   |1.03 %                                      |56331363                                    |0.99 %                                      |61593985                                    |1.08 %                                     |
+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+--------------------------------------------+-------------------------------------------+

Bisulfite Conversion Rate
^^^^^^^^^^^^^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Bisulfite Conversion Type                   |Conversion Rate                            |
+============================================+===========================================+
|Under Conversion Rate                       |0.9947118597615864                         |
+--------------------------------------------+-------------------------------------------+
|Over Conversion Rate                        |NA                                         |
+--------------------------------------------+-------------------------------------------+

Correct Pairs
^^^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Concept                                     |Total Reads                                |
+============================================+===========================================+
|Correct Pairs                               |51125629                                   |
+--------------------------------------------+-------------------------------------------+

Mapping Quality Histogram
^^^^^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612431.41_mapq.png

Read Length
^^^^^^^^^^^

+--------------------------------------------+-------------------------------------------+
|Read Length                                 |Reads                                      |
+============================================+===========================================+
|101                                         |56054132                                   |
+--------------------------------------------+-------------------------------------------+
|101                                         |56054132                                   |
+--------------------------------------------+-------------------------------------------+

Insert Size Histogram
^^^^^^^^^^^^^^^^^^^^^

.. image:: 41_Hm09.Bisulfite-Seq.DNA_methylation.EGAX00001612431.41_isize.png

