/EXTERNAL DEEP/mapping_coverage/K008990_K008991_K008992_K008993_K008994_K008995_K008996_K008997_K008998_K008999_K009000_K009001_K009002_K009003_K009004_K009005_16_lane_gembs
BACK
SAMPLE K008990_K008991_K008992_K008993_K008994_K008995_K008996_K008997_K008998_K008999_K009000_K009001_K009002_K009003_K009004_K009005_16_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1480328070 |
100% |
143229049430 |
100% |
| Mapped |
1454150931 |
98.23 % |
140617763547 |
98.18 % |
| Passed |
886360657 |
59.88 % |
84854881891 |
59.24 % |
| NotPassed |
567790274 |
38.36 % |
55762881656 |
38.93 % |
| |
|
|
|
|
| LowMAPQ |
252445740 |
17.05 % |
24509306910 |
17.11 % |
| MateUnmapped |
26177139 |
1.77 % |
2586349206 |
1.81 % |
| Duplicate |
102382605 |
6.92 % |
9846096538 |
6.87 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
38610 |
0.00 % |
3833691 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
212923319 |
14.38 % |
21403644517 |
14.94 % |
| Unmapped |
26177139 |
1.77 % |
2611285883 |
1.82 % |
Base Level Counts
| Bases |
# |
% |
| Total |
87834457796 |
100% |
| Passed |
79410831349 |
90.41 % |
| Trimmed |
4226282473 |
4.81 % |
| Clipped |
277638272 |
0.32 % |
| Overlapping |
2701937633 |
3.08 % |
| LowQuality |
1217768069 |
1.39 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |