/EXTERNAL DEEP/methylation/K008990_K008991_K008992_K008993_K008994_K008995_K008996_K008997_K008998_K008999_K009000_K009001_K009002_K009003_K009004_K009005_16_lane_gembs
BACK
SAMPLE K008990_K008991_K008992_K008993_K008994_K008995_K008996_K008997_K008998_K008999_K009000_K009001_K009002_K009003_K009004_K009005_16_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26036801 |
18884623 |
72.53 % |
| NonRefCpG |
307886 |
153384 |
49.82 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
7663004 |
15.04 % |
5004377 |
11.78 % |
120585 |
21.24 % |
44045 |
11.65 % |
| Intermediate (0.3-0.7) |
12502847 |
24.53 % |
9742883 |
22.93 % |
159608 |
28.11 % |
98584 |
26.07 % |
| Methylated (0.7-1) |
30795262 |
60.43 % |
27737637 |
65.29 % |
287510 |
50.64 % |
235470 |
62.28 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.780 |
|
0.810 |
|
0.700 |
|
0.790 |
|