/EXTERNAL DEEP/K009006_K009007_K009008_K009009_K009010_K009011_K009012_K009013_K009014_K009015_K009016_K009017_K009018_K009019_K009020_K009021_16_lane_gembs/41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612178.41
BACK
SAMPLE K009006_K009007_K009008_K009009_K009010_K009011_K009012_K009013_K009014_K009015_K009016_K009017_K009018_K009019_K009020_K009021_16_lane_gembs LANE 41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612178.41
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 166971262 | 100.00 % | 83485631 | 100.00 % | 83485631 | 100.00 % |
| General Reads | 163752735 | 98.07 % | 82366365 | 98.66 % | 81386370 | 97.49 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 382793 | 0.23 % | 192873 | 0.23 % | 189920 | 0.23 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 2835734 | 1.70 % | 926393 | 1.11 % | 1909341 | 2.29 % |
| Bisulfite_reads C2T | 83798683 | 50.19 % | 42135557 | 50.47 % | 41663126 | 49.90 % |
| Bisulfite_reads G2A | 80336845 | 48.11 % | 40423681 | 48.42 % | 39913164 | 47.81 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 62476946 |
| Average Unique | 74.84 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 6538098603 | 38.39 % | 2573801940 | 30.22 % | 3964296663 | 46.55 % |
| Base Counts Overall C | 1913243592 | 11.23 % | 80130175 | 0.94 % | 1833113417 | 21.53 % |
| Base Counts Overall G | 1934295698 | 11.36 % | 1871927426 | 21.98 % | 62368272 | 0.73 % |
| Base Counts Overall T | 6469906520 | 37.99 % | 3905765517 | 45.87 % | 2564141003 | 30.11 % |
| Base Counts Overall N | 175524311 | 1.03 % | 83909304 | 0.99 % | 91615007 | 1.08 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | 0.9945518100791201 |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 73848353 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 101 | 83485631 |
| 101 | 83485631 |
Insert Size Plot
| Insert Size Histogram |
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