/EXTERNAL DEEP/K009006_K009007_K009008_K009009_K009010_K009011_K009012_K009013_K009014_K009015_K009016_K009017_K009018_K009019_K009020_K009021_16_lane_gembs/41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612192.41

BACK

SAMPLE K009006_K009007_K009008_K009009_K009010_K009011_K009012_K009013_K009014_K009015_K009016_K009017_K009018_K009019_K009020_K009021_16_lane_gembs LANE 41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612192.41

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 47360034 100.00 % 23680017 100.00 % 23680017 100.00 %
General Reads 44505119 93.97 % 22355590 94.41 % 22149529 93.54 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1805 0.00 % 907 0.00 % 898 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 2853110 6.02 % 1323520 5.59 % 1529590 6.46 %
Bisulfite_reads C2T 22715763 47.96 % 11404491 48.16 % 11311272 47.77 %
Bisulfite_reads G2A 21791161 46.01 % 10952006 46.25 % 10839155 45.77 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 13972703
Average Unique 59.01 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 1889730815 39.12 % 772238388 31.97 % 1117492427 46.27 %
Base Counts Overall C 523675478 10.84 % 37343943 1.55 % 486331535 20.13 %
Base Counts Overall G 511086871 10.58 % 478845125 19.82 % 32241746 1.33 %
Base Counts Overall T 1851382422 38.33 % 1102390132 45.64 % 748992290 31.01 %
Base Counts Overall N 54847882 1.14 % 24544146 1.02 % 30303736 1.25 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9948873575049372
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 16874690



Mapping Quality

Mapping Quality Histogram
41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612192.41.mapq.png



Read Length

Read Length Reads
101 23680017
101 23680017



Insert Size Plot

Insert Size Histogram
41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612192.41.isize.png