/EXTERNAL DEEP/K009006_K009007_K009008_K009009_K009010_K009011_K009012_K009013_K009014_K009015_K009016_K009017_K009018_K009019_K009020_K009021_16_lane_gembs/41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612269.41
BACK
SAMPLE K009006_K009007_K009008_K009009_K009010_K009011_K009012_K009013_K009014_K009015_K009016_K009017_K009018_K009019_K009020_K009021_16_lane_gembs LANE 41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612269.41
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 60516134 | 100.00 % | 30258067 | 100.00 % | 30258067 | 100.00 % |
| General Reads | 56406791 | 93.21 % | 28191120 | 93.17 % | 28215671 | 93.25 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 2251 | 0.00 % | 1129 | 0.00 % | 1122 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 4107092 | 6.79 % | 2065818 | 6.83 % | 2041274 | 6.75 % |
| Bisulfite_reads C2T | 28778262 | 47.55 % | 14373090 | 47.50 % | 14405172 | 47.61 % |
| Bisulfite_reads G2A | 27630780 | 45.66 % | 13819159 | 45.67 % | 13811621 | 45.65 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 17637399 |
| Average Unique | 58.29 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 2407088020 | 39.00 % | 985579367 | 31.93 % | 1421508653 | 46.06 % |
| Base Counts Overall C | 676586336 | 10.96 % | 49096997 | 1.59 % | 627489339 | 20.33 % |
| Base Counts Overall G | 647633996 | 10.49 % | 607323403 | 19.68 % | 40310593 | 1.31 % |
| Base Counts Overall T | 2369627354 | 38.39 % | 1412805198 | 45.78 % | 956822156 | 31.00 % |
| Base Counts Overall N | 71709962 | 1.16 % | 31517869 | 1.02 % | 40192093 | 1.30 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | 0.9653543834239583 |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 21264490 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 101 | 30258067 |
| 101 | 30258067 |
Insert Size Plot
| Insert Size Histogram |
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