/EXTERNAL DEEP/K009006_K009007_K009008_K009009_K009010_K009011_K009012_K009013_K009014_K009015_K009016_K009017_K009018_K009019_K009020_K009021_16_lane_gembs/41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612348.41
BACK
SAMPLE K009006_K009007_K009008_K009009_K009010_K009011_K009012_K009013_K009014_K009015_K009016_K009017_K009018_K009019_K009020_K009021_16_lane_gembs LANE 41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612348.41
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 69239916 | 100.00 % | 34619958 | 100.00 % | 34619958 | 100.00 % |
| General Reads | 64721050 | 93.47 % | 32465836 | 93.78 % | 32255214 | 93.17 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 2718 | 0.00 % | 1370 | 0.00 % | 1348 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 4516148 | 6.52 % | 2152752 | 6.22 % | 2363396 | 6.83 % |
| Bisulfite_reads C2T | 33043179 | 47.72 % | 16564480 | 47.85 % | 16478699 | 47.60 % |
| Bisulfite_reads G2A | 31680589 | 45.75 % | 15902726 | 45.94 % | 15777863 | 45.57 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 20477901 |
| Average Unique | 59.15 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 2749186908 | 38.93 % | 1126594128 | 31.90 % | 1622592780 | 45.95 % |
| Base Counts Overall C | 778588480 | 11.02 % | 61958355 | 1.75 % | 716630125 | 20.29 % |
| Base Counts Overall G | 755111300 | 10.69 % | 705753789 | 19.99 % | 49357511 | 1.40 % |
| Base Counts Overall T | 2695058510 | 38.16 % | 1598993274 | 45.28 % | 1096065236 | 31.04 % |
| Base Counts Overall N | 84526234 | 1.20 % | 37936170 | 1.07 % | 46590064 | 1.32 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | 0.9716185986167098 |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 24650694 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 101 | 34619958 |
| 101 | 34619958 |
Insert Size Plot
| Insert Size Histogram |
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