/EXTERNAL DEEP/K009006_K009007_K009008_K009009_K009010_K009011_K009012_K009013_K009014_K009015_K009016_K009017_K009018_K009019_K009020_K009021_16_lane_gembs/41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612412.41
BACK
SAMPLE K009006_K009007_K009008_K009009_K009010_K009011_K009012_K009013_K009014_K009015_K009016_K009017_K009018_K009019_K009020_K009021_16_lane_gembs LANE 41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612412.41
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 51935096 | 100.00 % | 25967548 | 100.00 % | 25967548 | 100.00 % |
| General Reads | 48844988 | 94.05 % | 24628806 | 94.84 % | 24216182 | 93.26 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 1994 | 0.00 % | 1004 | 0.00 % | 990 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 3088114 | 5.95 % | 1337738 | 5.15 % | 1750376 | 6.74 % |
| Bisulfite_reads C2T | 24940452 | 48.02 % | 12566494 | 48.39 % | 12373958 | 47.65 % |
| Bisulfite_reads G2A | 23906530 | 46.03 % | 12063316 | 46.46 % | 11843214 | 45.61 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 15334138 |
| Average Unique | 59.05 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 2073117294 | 39.13 % | 846430267 | 31.96 % | 1226687027 | 46.31 % |
| Base Counts Overall C | 574441072 | 10.84 % | 40447995 | 1.53 % | 533993077 | 20.16 % |
| Base Counts Overall G | 561296369 | 10.60 % | 526238654 | 19.87 % | 35057715 | 1.32 % |
| Base Counts Overall T | 2030491600 | 38.33 % | 1209169227 | 45.65 % | 821322373 | 31.01 % |
| Base Counts Overall N | 58033457 | 1.10 % | 26403753 | 1.00 % | 31629704 | 1.19 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | 0.9934889998674983 |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 18506298 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 101 | 25967548 |
| 101 | 25967548 |
Insert Size Plot
| Insert Size Histogram |
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