/EXTERNAL DEEP/K009006_K009007_K009008_K009009_K009010_K009011_K009012_K009013_K009014_K009015_K009016_K009017_K009018_K009019_K009020_K009021_16_lane_gembs/41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612439.41

BACK

SAMPLE K009006_K009007_K009008_K009009_K009010_K009011_K009012_K009013_K009014_K009015_K009016_K009017_K009018_K009019_K009020_K009021_16_lane_gembs LANE 41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612439.41

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 149284566 100.00 % 74642283 100.00 % 74642283 100.00 %
General Reads 143615979 96.20 % 71879346 96.30 % 71736633 96.11 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 3 0.00 % 1 0.00 % 2 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 5668584 3.80 % 2762936 3.70 % 2905648 3.89 %
Bisulfite_reads C2T 72204723 48.37 % 36137841 48.41 % 36066882 48.32 %
Bisulfite_reads G2A 71411259 47.84 % 35741506 47.88 % 35669753 47.79 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 54373385
Average Unique 72.85 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 5142953128 36.83 % 1886837688 28.22 % 3256115440 44.73 %
Base Counts Overall C 1946008669 13.94 % 187971438 2.81 % 1758037231 24.15 %
Base Counts Overall G 1922811377 13.77 % 1708621443 25.56 % 214189934 2.94 %
Base Counts Overall T 4802798000 34.39 % 2827357609 42.29 % 1975440391 27.14 %
Base Counts Overall N 149861664 1.07 % 74652063 1.12 % 75209601 1.03 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate NA
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 64805393



Mapping Quality

Mapping Quality Histogram
41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612439.41.mapq.png



Read Length

Read Length Reads
78 240896
41 181159
27 174909
33 176060
39 176299
51 185723
52 184859
83 116499
80 207196
72 236325
89 1754841
70 235877
60 215080
55 185488
23 173578
69 236033
66 200303
58 213970
88 930850
95 2169199
73 308700
30 171712
59 224462
22 172190
68 230687
31 173252
35 173563
26 179891
79 223309
25 191623
98 23375983
43 195265
96 4718784
57 196442
49 184274
97 18713481
74 347667
82 121288
42 187816
81 172440
24 192952
67 223657
85 223144
91 1954970
77 259721
50 186845
36 177111
44 191750
76 297064
65 201400
53 181743
38 180449
54 187586
29 173108
37 175782
94 1458371
93 1057477
71 252954
32 173306
86 334297
48 180739
87 480376
75 327824
47 178259
62 191924
63 192187
34 172440
40 180123
92 569278
64 196578
90 3975556
21 179395
45 181411
84 163372
46 178113
20 181275
61 203929
28 176763
56 191081
78 56152
41 35773
27 19693
33 28552
39 29360
51 31479
52 32925
83 65392
80 58190
72 77702
89 165957
70 156482
60 39380
55 35107
23 16308
69 177023
66 97518
58 38292
88 125152
95 1781643
73 63418
30 23222
59 38549
22 17405
68 165237
31 27718
35 27434
26 18674
79 56406
25 17709
98 14334929
43 30622
96 4940267
57 36917
49 33827
97 5269586
74 57820
82 61815
42 29367
81 59603
24 16331
67 129835
85 75409
91 238298
77 54354
50 32671
36 24709
44 32988
76 54524
65 83096
99 42884930
53 33688
38 26215
54 34059
29 21629
37 25225
94 635236
93 373612
71 109010
32 27594
86 81803
48 37398
87 95526
75 54343
47 38761
62 60316
63 73446
34 28187
40 32638
92 225781
64 78268
90 261889
21 16461
45 35976
84 69622
46 39577
20 15914
61 46033
28 21425
56 36901



Insert Size Plot

Insert Size Histogram
41_Hm25.Bisulfite-Seq.DNA_methylation.EGAX00001612439.41.isize.png